ID:

mml-mir-323a

 Coordinate:

chr7:164925496-164925581 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.4 -34.0

Sense Strand Reads

ATATCAGCTTTGAGGAAGAGCCACTGTCCTGGTGTCAGTACGGCTGCTGCTTGGTACTTGGAGAGAGGTGGTCCGTGGCGCGTTCGCTTTATTTATGGCGCACATTACACGGTCGACCTCTTTGCAGTATCTAATCCCGCCTTGCAAGCTTTCCTGGAGCTAACATCAACTGCGGGGGGAGGGGGG

**************************************************..(((((.((.((((((((...(((((....((.((((........)))).))....)))))...)))))))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116844

epididymis		 SRR116845

epididymis
....................................................................................................CACATTACACGGTCGACCTCT................................................................. 21 0 1 2636.00 2636 2391 165 43 29 8 0 0
...................................................................................................GCACATTACACGGTCGACCTCT................................................................. 22 0 1 440.00 440 402 24 10 4 0 0 0
....................................................................................................CACATTACACGGTCGACCTCA................................................................. 21 1 1 229.00 229 213 9 5 2 0 0 0
....................................................................................................CACATTACACGGTCGACCTC.................................................................. 20 0 1 44.00 44 39 4 1 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCTA................................................................ 22 1 1 33.00 33 30 0 2 1 0 0 0
....................................................................................................CACATTACACGGTCGACCTCC................................................................. 21 1 1 30.00 30 26 2 1 1 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCG.................................................................................................... 21 0 1 28.00 28 27 0 0 1 0 0 0
....................................................................................................CACATTACACGGTCGACCTCTT................................................................ 22 0 1 24.00 24 20 1 3 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCA................................................................. 22 1 1 21.00 21 21 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCTAA............................................................... 23 2 2 17.00 34 32 1 0 1 0 0 0
....................................................................................................CACATTACACGTTCGACCTCT................................................................. 21 1 1 15.00 15 15 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCG................................................................. 21 1 1 14.00 14 12 0 2 0 0 0 0
....................................................................................................CACATTACACTGTCGACCTCT................................................................. 21 1 2 11.00 22 21 0 1 0 0 0 0
....................................................................................................CACATTACACGATCGACCTCT................................................................. 21 1 1 10.00 10 9 1 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACC.................................................................... 18 0 1 10.00 10 9 1 0 0 0 0 0
....................................................................................................CACATTACACGGTCGAACTCT................................................................. 21 1 1 9.00 9 8 1 0 0 0 0 0
....................................................................................................CACATTACACGGTTGACCTCT................................................................. 21 1 1 9.00 9 9 0 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCGT................................................................................................... 22 1 1 8.00 8 7 0 1 0 0 0 0
....................................................................................................CACATTACACGGTCGACTTCT................................................................. 21 1 1 8.00 8 8 0 0 0 0 0 0
....................................................................................................CACATTACACGGCCGACCTCT................................................................. 21 1 1 8.00 8 8 0 0 0 0 0 0
....................................................................................................CACATTACACGGGCGACCTCT................................................................. 21 1 1 7.00 7 7 0 0 0 0 0 0
....................................................................................................CACATTACACGCTCGACCTCT................................................................. 21 1 1 7.00 7 7 0 0 0 0 0 0
....................................................................................................CACATTCCACGGTCGACCTCT................................................................. 21 1 1 7.00 7 7 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTC.................................................................. 21 0 1 7.00 7 7 0 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTC..................................................................................................... 20 0 1 7.00 7 6 1 0 0 0 0 0
....................................................................................................CACATTACACGGTCTACCTCT................................................................. 21 1 2 5.50 11 11 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCT................................................................... 19 0 1 5.00 5 5 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCTAA............................................................... 24 2 1 5.00 5 5 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCTA................................................................ 23 1 1 5.00 5 3 0 2 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCGC................................................................................................... 22 0 1 5.00 5 5 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCCCT................................................................. 21 1 1 5.00 5 5 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTTT................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0
...................................................................................................GCACATTACACGGCCGACCTCT................................................................. 22 1 1 4.00 4 3 1 0 0 0 0 0
...................................................................................................GCACATTACACGGGCGACCTCT................................................................. 22 1 1 4.00 4 4 0 0 0 0 0 0
....................................................................................................TACATTACACGGTCGACCTCT................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................CACATTACACGGCCGACCTCA................................................................. 21 2 1 3.00 3 3 0 0 0 0 0 0
...................................................................................................GCACATTACACTGTCGACCTCT................................................................. 22 1 1 3.00 3 2 1 0 0 0 0 0
..................................................................................................CGCACATTACACGGTCGACCTCT................................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................AAGCACATTACACGGTCGACCTCT................................................................. 24 2 1 3.00 3 3 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCTACCTCT................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTTGACCTCT................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCTTT............................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................GCACATTACCCGGTCGACCTCT................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCGCA.................................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCT.................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CACATTATACGGTCGACCTCT................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCCACCTCT................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CACATTACACGCTCGACCTCA................................................................. 21 2 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCTT................................................................ 23 0 1 2.00 2 1 1 0 0 0 0 0
...................................................................................................GCACATTACACGGTTGACCTCTAA............................................................... 24 3 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CACACTACACGGTCGACCTCT................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCC................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCGCT.................................................................................................. 23 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTTA................................................................. 21 2 1 2.00 2 1 1 0 0 0 0 0
....................................................................................................CACATTACACGGTCGATCTCT................................................................. 21 1 1 2.00 2 0 0 0 2 0 0 0
..................................................................................................AGCACATTACACGGTCGACCTCT................................................................. 23 1 1 2.00 2 0 2 0 0 0 0 0
...................................................................................................GCACCTTACACGGTCGACCTCT................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGGCCTCT................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCAA................................................................ 22 2 2 1.50 3 3 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGGCCTCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTTT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGCCCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCT................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGAACTCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACATCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACCCGGTCGCCCTCT................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................TACATTACACGGACGACCTCT................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................GCACCTTACACGGTCGATCTCT................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGACGACCTCT................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................CACATTACACGGTCGTCCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTT.................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCATC............................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0
...................................................................................................GCACATTACACGGTCGACCCCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCAACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCCCC................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCG................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
.............................................GCTGCTTGGTACTTGGAGAGATC...................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................CACATCACACGGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCGAATC................................................................................................ 25 3 1 1.00 1 0 0 0 0 0 0 1
.................................................................AGGTGGTCCGTGGCGCGTTCA.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCGT................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................ACACATTACACGGTCGACCTCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCAA................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCAC................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTTC................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCTAT............................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGGCGACCTCA................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGTTCGA................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATCACACGGTCGACCTCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACCGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACGTTACACGGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................AGGTGGTCCGTTGCGCGTTCG.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTTCTA............................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTAAACGGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATCACACGTTCGACCTCT................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CATATTACACGGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CTCATTACACGGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGTCCTCA................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACCTTACACGGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACGCGGTCGACCTCT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCTATC.............................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................CACATTACACGGACGACCTCC................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTGT................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................ACATTACACGGTCGACCTCA................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTATACTGTCGACCTCT................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................AGGTGGTCCGTGGCGCGT....................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACCGTCGACCTCA................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGTCCTCTATC.............................................................. 24 3 1 1.00 1 0 0 0 0 0 1 0
.....................................................................................................ACATTACACGGGCGACCTCT................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................ACATTACACGGTCGACCTCT................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGACGACCTCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACCTCTATT.............................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGCCGACCTCA................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCGCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTCCCCGGTCGACCTCT................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCAAATTACACGGTCGACCTCT................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGAC..................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CTCACATTACACGGTCGACCT................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTACACGGTCGACCTCTAT............................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................GCACATTATACGGTCGACCTCT................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................CGCATTACACGGTCGACCTCT................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................CACATTACACTGCCGACCTCT................................................................. 21 2 3 0.67 2 2 0 0 0 0 0 0
...................................................................................................GCCCATTACCCGGTCGACCTCT................................................................. 22 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CAAATTACACGTTCGACCTCT................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CACATTACAAGTTCGACCTCT................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTTGACCTC.................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................ACATTACACGGTCGACCTCTAA............................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................GCACATTTCACGGTCGACCTTT................................................................. 22 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTTGACCT................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACTGTCGACTTCT................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACTTCTAA............................................................... 23 3 2 0.50 1 0 0 1 0 0 0 0
....................................................................................................CACATTACACGGTCGAACTCA................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTCGACTTTT................................................................. 21 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACTTTCGACCTCT................................................................. 21 2 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTTGACATC.................................................................. 20 2 3 0.33 1 0 0 0 0 0 1 0
.................................................................AGGTGGTCCATGGCGCGTTCT.................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGCTCGACCTCC................................................................. 21 2 3 0.33 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGTTGACCTCTAA............................................................... 23 3 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................CACATTCCACTGTCGACCTCT................................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0
....................................................................................................CACATTACACGGCCGACATCA................................................................. 21 3 13 0.08 1 1 0 0 0 0 0 0

Anti-sense strand reads

TATAGTCGAAACTCCTTCTCGGTGACAGGACCACAGTCATGCCGACGACGAACCATGAACCTCTCTCCACCAGGCACCGCGCAAGCGAAATAAATACCGCGTGTAATGTGCCAGCTGGAGAAACGTCATAGATTAGGGCGGAACGTTCGAAAGGACCTCGATTGTAGTTGACGCCCCCCTCCCCCC

**************************************************..(((((.((.((((((((...(((((....((.((((........)))).))....)))))...)))))))).))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:28 PM