ID:

mml-mir-3200

 Coordinate:

chr10:75456633-75456742 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.9 -36.8 -36.4

Sense Strand Reads

ATGCAAGCCCAGAAGTGGAGGGACGGCATGACCTGGATGAGGCATCACCGAGAGAGACAAAGAAGGAGGTGGTCGAGGGAATCTGAGAAGGCGCACAAGGTTTGTGTCCAATACAGTCCACACCTTGCGCTACTCAGGTCTGCTCGTGCCCTCCCATGATATCAGCTCTCCTGCTTCAATGTGGGAATCTCCATTTTCCTTGGAGAACAA

****************************************************************(((((....(((((((.((((((..((((((..((((((((((...)))))).....)))))))))).))))))))).))))...)))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle		 SRR116844

epididymis
...............................................................................AATCTGAGAAGGCGCACAAGGTTT........................................................................................................... 24 0 1 53.00 53 53 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGTT............................................................................................................ 23 0 1 33.00 33 31 2 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGTT............................................................................................................ 24 0 1 15.00 15 15 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGTTTG.......................................................................................................... 25 0 1 15.00 15 15 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGT............................................................................................................. 23 0 1 12.00 12 11 0 0 1 0
..............................................................................GAATCTGAGAAGGCGCACAAGGTTT........................................................................................................... 25 0 1 10.00 10 10 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGT............................................................................................................. 22 0 1 6.00 6 6 0 0 0 0
........................................................................................................................CACCTTGCGCTACTCAGGTCTGT................................................................... 23 1 1 4.00 4 4 0 0 0 0
........................................................................................................................CACCTTGCGCTACTCAGGTCTGC................................................................... 23 0 1 4.00 4 4 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGTTTGT......................................................................................................... 26 0 1 3.00 3 3 0 0 0 0
........................................................................................................................CACCTTGCGCTACTCAGGTCTG.................................................................... 22 0 1 3.00 3 3 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGTA............................................................................................................ 24 1 1 2.00 2 1 1 0 0 0
........................................................................................................................CACCTTGCGCTACTCAGGTCT..................................................................... 21 0 1 2.00 2 2 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAA................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0
...............................................................................AATCTGAGACGGCGCACAAGGGT............................................................................................................ 23 2 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGG............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCCCAAGGTT............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAACGCGCACAAGGTT............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGTTTT.......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
........................................................................................................................CACCTTGCGCTACTCAGGTCTGA................................................................... 23 1 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAG............................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCACACAAGGTTT........................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGGTTG.......................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAATGCGCACAAGGTTTT.......................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGA............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGTTTG.......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
........................................................................................................................CACCTTGCTCTACTCAGGTCTGC................................................................... 23 1 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAA................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAAGGCTCACAAGGTT............................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAAGGCACACAAGGT............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
........................................................................................................................CACCTTGCGCTTCTCAGGTCTGT................................................................... 23 2 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGGT............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..............................................................................GAATCTGAGAAGGCGCACAAGGTTTT.......................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAAGTCGCACAAGGTT............................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
...............................................................................AATCTCAGAAGGCGCACAAGGTTT........................................................................................................... 24 1 1 1.00 1 0 0 1 0 0
...............................................................................AATCTGAGAAGGTGCACAAGGTA............................................................................................................ 23 2 1 1.00 1 1 0 0 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGTTA........................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
........................................................................................................................CACCTTGCGCTACTCAGGTCTGCAT................................................................. 25 2 1 1.00 1 0 0 1 0 0
...............................................................................AATCTGAGAAGGCGCACAAGGGTT........................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.......................CGGCGTGACCTGGAGCAGGCATC.................................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 1

Anti-sense strand reads

TACGTTCGGGTCTTCACCTCCCTGCCGTACTGGACCTACTCCGTAGTGGCTCTCTCTGTTTCTTCCTCCACCAGCTCCCTTAGACTCTTCCGCGTGTTCCAAACACAGGTTATGTCAGGTGTGGAACGCGATGAGTCCAGACGAGCACGGGAGGGTACTATAGTCGAGAGGACGAAGTTACACCCTTAGAGGTAAAAGGAACCTCTTGTT

****************************************************(((((....(((((((.((((((..((((((..((((((((((...)))))).....)))))))))).))))))))).))))...)))))....**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
........................................................TGTTTCTTCCTCCAGCACCTCTC................................................................................................................................... 23 3 8 0.13 1 1

Generated: 09/01/2015 at 12:06 PM