ID:

mml-mir-3140

 Coordinate:

chr5:146199952-146200064 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-55.7 -55.4 -55.1

Sense Strand Reads

TAGAGTTGGTACATAGTTATACTGAGTATGAATGTCTTCGTAGGCTTGGAAGCCTACCATTTGTGTCCTCTTGAGGTACCTGAATTACCAAAAGCTATGTATTCTGAAGTTATTGAAAATAAGAGCTTTTGGGAATTCAGGTAGTTCAGGAGTGACTTTTCTAAAAAACAGACCTGAGCACCATATACTACTACTTATAGCCTTTTATTTACT

***********************************....(((((((....)))))))..((((((((((((((((.(((((((((..(((((((((.(((.(((..........))).)))..)))))))))..))))))))).)))))))).)))...........)))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116845

epididymis		 SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116844

epididymis
........................................................................................................................AAGAGCTTTTGGGAATTCAGGTA...................................................................... 23 0 1 5.00 5 3 0 0 0 2 0
........................................................................................................................AAGAGCTTTTGGGAATTCAGGT....................................................................... 22 0 1 4.00 4 1 0 1 2 0 0
.......................................................................................................................TAAGAGCTTTTGGGAATTCAGGTATC.................................................................... 26 2 1 2.00 2 0 2 0 0 0 0
........................................................................................................................AAGAGCTTTTGGGAATTCAGGTATC.................................................................... 25 2 1 2.00 2 0 2 0 0 0 0
........................................................................................................................AAGAGCTTTTGGGAATTCAGGTTATC................................................................... 26 3 1 1.00 1 0 1 0 0 0 0
........................................................................................................................AAGAGCTTTTGGGAATTCAGGTAG..................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................AAGAGCTTTTGGGAATTCAGGTAT..................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................AGAGCTTTTGGGAATTCAGGTAT..................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
........................................................................................................................AAGAGCTTTTGGGAATTCAGGTT...................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................TAAGAGCTTTTGGGAATTCAGGT....................................................................... 23 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................AAGAGCTTTTGGGAATTCA.......................................................................... 19 0 2 0.50 1 0 0 1 0 0 0
..............................................................................................................................TTTTGGGAATTCAGGTA...................................................................... 17 0 3 0.33 1 0 0 0 1 0 0
.........................................................................................................................AGAGCTTTTGTTAATTCAGGTA...................................................................... 22 2 3 0.33 1 0 0 1 0 0 0
........................................................................................................................AAGAGCTTTTGGGAATTCAGATC...................................................................... 23 2 4 0.25 1 0 0 0 0 0 1
........................................................................................................................AAGAGCTTTTGGGAATTCAGGATC..................................................................... 24 3 5 0.20 1 0 1 0 0 0 0

Anti-sense strand reads

ATCTCAACCATGTATCAATATGACTCATACTTACAGAAGCATCCGAACCTTCGGATGGTAAACACAGGAGAACTCCATGGACTTAATGGTTTTCGATACATAAGACTTCAATAACTTTTATTCTCGAAAACCCTTAAGTCCATCAAGTCCTCACTGAAAAGATTTTTTGTCTGGACTCGTGGTATATGATGATGAATATCGGAAAATAAATGA

***********************************....(((((((....)))))))..((((((((((((((((.(((((((((..(((((((((.(((.(((..........))).)))..)))))))))..))))))))).)))))))).)))...........)))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
............................................................................ATGGACTTAATTGTTTTCGAGA................................................................................................................... 22 2 3 0.33 1 1

Generated: 09/01/2015 at 12:25 PM