ID:

mml-mir-30b

 Coordinate:

chr8:139764211-139764298 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.3 -36.9 -36.8

Sense Strand Reads

TTACTTAAAGGACCATACAAACTTAGTAAAGAGTTTAAGTCCTGCTTTAAACCAAGTTTCAGTTCATGTAAACATCCTACACTCAGCTGTAATACATGGATTGGCTGGGAGGTGGATGTTTACTTCAGCTGACTTGGAATATCAACCAATTAACATTGATAAAGATTTGGCAAGAATAGTATACAGAG

***************************************************(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...)))))))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116841

prostate		 SRR116839

testes
..................................................................TGTAAACATCCTACACTCAGCTATC................................................................................................. 25 2 1 817.00 817 411 406 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCT.................................................................................................... 22 0 1 170.00 170 1 0 41 52 39 33 4
........................................................................................................CTGGGAGGTGGATGTTTACTT............................................................... 21 0 1 168.00 168 0 0 74 41 30 19 4
........................................................................................................CTGGGAGGTGGATGTTTACT................................................................ 20 0 1 104.00 104 0 0 32 33 30 9 0
........................................................................................................CTGGGAGGTGGATGTTTACTTA.............................................................. 22 1 1 47.00 47 0 0 14 23 3 7 0
........................................................................................................CTGGGAGGTGGATGTTTACTTC.............................................................. 22 0 1 40.00 40 0 0 22 4 9 4 1
........................................................................................................CTGGGAGGTGGATGTTTACTTAA............................................................. 23 1 1 30.00 30 0 0 6 13 4 7 0
........................................................................................................CTGGGAGGTGGATGTTTACTTT.............................................................. 22 1 1 22.00 22 0 0 7 5 5 5 0
..................................................................TGTAAACATCCTACACTCAGATC................................................................................................... 23 2 1 15.00 15 6 9 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTA............................................................... 21 1 1 12.00 12 0 0 2 7 2 1 0
..................................................................TGTAAACATCCTACACTCAGCTA................................................................................................... 23 1 1 12.00 12 4 1 2 1 4 0 0
..................................................................TGTAAACATCCTACACTCAGC..................................................................................................... 21 0 1 12.00 12 0 0 3 6 3 0 0
..................................................................TGTAAACATCCTACACTCAGCTTC.................................................................................................. 24 2 1 10.00 10 7 3 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCCTC.................................................................................................. 24 3 2 8.50 17 12 5 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTAA.............................................................. 22 2 3 7.67 23 0 0 6 9 6 2 0
..................................................................TGTAAACATTCTACACTCAGCTATC................................................................................................. 25 3 1 7.00 7 3 4 0 0 0 0 0
..................................................................TGTAAACATCCTACCCTCAGCTATC................................................................................................. 25 3 1 7.00 7 3 4 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTAT.................................................................................................. 24 1 1 7.00 7 1 4 0 1 0 1 0
..................................................................TGTAAACATCCTACACTCAGCTT................................................................................................... 23 1 1 6.00 6 0 0 0 1 2 3 0
...................................................................TTAAACATCCTACACTCAGCTATC................................................................................................. 24 3 1 6.00 6 2 4 0 0 0 0 0
..................................................................TGTAAACATCCTCCACTCAGCTATC................................................................................................. 25 3 1 6.00 6 4 2 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTCTC................................................................................................. 25 2 1 6.00 6 5 1 0 0 0 0 0
....................................................................TAAACATCCTACACTCAGCTATC................................................................................................. 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTTTC................................................................................................. 25 2 1 5.00 5 1 4 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTAC................................................................. 19 0 1 5.00 5 0 0 2 1 1 1 0
..................................................................TGTAAACATCCTACACTC........................................................................................................ 18 0 3 4.33 13 2 4 2 1 2 2 0
..................................................................TGTAAACATCCTACACTCAGCTAA.................................................................................................. 24 2 1 4.00 4 0 2 1 1 0 0 0
...................................................................GTAAACATCCTACACTCAGCTATC................................................................................................. 24 2 1 4.00 4 1 3 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTCA............................................................. 23 0 1 4.00 4 0 0 1 1 0 1 1
..................................................................TGTAAACATCCTACACTCAGCA.................................................................................................... 22 1 1 4.00 4 0 0 0 1 1 2 0
..................................................................TTTAAACATCCTACACTCAGCTATC................................................................................................. 25 3 1 4.00 4 2 2 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTGATC................................................................................................ 26 3 1 3.00 3 0 3 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTGA............................................................. 23 1 1 3.00 3 0 0 1 2 0 0 0
.........................................................................................................TGGGAGGTGGATGTTTACTT............................................................... 20 0 1 3.00 3 0 0 1 1 0 1 0
........................................................................................................CTGGGAGGTGGATGTTTACTTAT............................................................. 23 2 1 3.00 3 0 0 0 2 0 1 0
........................................................................................................CTGGGAGGTGGATGTTTACTTCT............................................................. 23 1 1 3.00 3 0 0 0 0 0 3 0
........................................................................................................CTGGGAGGTGGATGTTTACTTTA............................................................. 23 1 1 3.00 3 0 0 0 1 1 1 0
........................................................................................................CTGGGAGGTGGATGTTTACTTAG............................................................. 23 2 1 3.00 3 0 0 0 1 2 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTTT............................................................. 23 2 1 3.00 3 0 0 0 2 1 0 0
..................................................................TGTAAACATCCTACACTCAG...................................................................................................... 20 0 1 3.00 3 0 0 0 2 0 1 0
..................................................................TGTGAACATCCTACACTCAGCTTTC................................................................................................. 25 3 1 2.00 2 0 2 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCATT.................................................................................................. 24 2 1 2.00 2 1 1 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGTTATC................................................................................................. 25 3 1 2.00 2 0 2 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCATC..................................................................................................... 21 1 1 2.00 2 1 0 0 0 0 1 0
.........................................................................................................TGGGAGGTGGATGTTTACTTCT............................................................. 22 1 1 2.00 2 0 0 1 0 0 1 0
..................................................................TGTAAACATCCTACACTCATCT.................................................................................................... 22 1 1 2.00 2 0 0 1 0 1 0 0
..................................................................TGTAAATATCCTACACTCAGCTATC................................................................................................. 25 3 1 2.00 2 2 0 0 0 0 0 0
..................................................................TGTAAACATCCTGCACTCAGCTATC................................................................................................. 25 3 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTAT.............................................................. 22 2 2 2.00 4 0 0 0 1 2 1 0
..................................................................TGTAAACATCCTACACTCCGCTATC................................................................................................. 25 3 1 2.00 2 0 2 0 0 0 0 0
..................................................................TGTTAACATCCTACACTCAGCTATC................................................................................................. 25 3 1 2.00 2 1 1 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCAA................................................................................................... 23 2 1 2.00 2 0 0 0 0 1 1 0
..................................................................TGTAAACATCCTACACTCAGCTAAAA................................................................................................ 26 2 1 2.00 2 0 0 0 1 1 0 0
........................................................................................................CTGGGAGGTGGATTTTTACTT............................................................... 21 1 1 2.00 2 0 0 1 0 0 1 0
........................................................................................................CTGGGAGGTGGCTGTTTACT................................................................ 20 1 1 2.00 2 0 0 1 0 0 1 0
........................................................................................................CTGGGAGGTGTATGTTTACTT............................................................... 21 1 1 2.00 2 0 0 1 0 0 1 0
........................................................................................................CTGGGAGGTGGATGTTTACA................................................................ 20 1 3 1.67 5 0 0 2 1 0 2 0
........................................................................................................CTGGGAGGTGGATGTTTACTTTATC........................................................... 25 2 2 1.50 3 1 2 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTAAA............................................................. 23 2 2 1.50 3 0 0 1 2 0 0 0
........................................................................................................CTGGGAGGTGGATGTATACT................................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTA.................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................TGTAAACATCCTACACCCAGCTATC................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CTGGGAGGAGGATGTTTACTTCA............................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCTTACACTCAGCTATC................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGA..................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTTTT................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 1 0
..................................................................TGTAAACATCCTACACTCAGCAC................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTTAA............................................................ 24 2 1 1.00 1 0 0 0 1 0 0 0
..................................................................TGTAAATATCCTACACTCAGCT.................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................CCGGGAGGTGGATGTTTACTT............................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
....................................................................TAAACATCCTACACTCAGCT.................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................GTAAGCATCCTACACTCAGCTATC................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTG.............................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0
................................................................AATGTAAACATCCTACACTCAGCT.................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 1
..................................................................AGTAAACATCCTACACTCAGCTATC................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................TGGGAGGTGGATGTTTACTTAA............................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTATATC............................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................TGTAAACCTCCTACACTCAGCTATC................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CTGGTAGGTGGATGTTTACTT............................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCCATC................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTATTT............................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
...................................................................GTAACCATCCTACACTCAGCTATC................................................................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTAAT............................................................ 24 2 1 1.00 1 0 0 0 0 0 1 0
..................................................................TGTAAACATCCTACACTCAGCTAGAATC.............................................................................................. 28 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTAATC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTTT.................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 1 0
................................................................AATGTAAACATCCTACACTCAGCTAT.................................................................................................. 26 2 1 1.00 1 0 0 0 0 0 1 0
........................................................................................................CTGAGAGGTGGATGTTTACT................................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCCTACACTCAGCCC................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................................TGTAAACATCCTACACTGAGCTATC................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0
......................................................................AACATCCTACACTCAGCT.................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTCTTTT.......................................................... 26 3 1 1.00 1 0 0 0 0 0 1 0
........................................................................................................CTGGGAGGTGGATGTTTACTTCAA............................................................ 24 1 1 1.00 1 0 0 0 0 1 0 0
..................................................................TGTACACATCCTACACTCAGCTATC................................................................................................. 25 3 2 1.00 2 1 1 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCACC.................................................................................................. 24 3 2 1.00 2 2 0 0 0 0 0 0
..................................................................TGCAAACATCCTACACTCAGCTATC................................................................................................. 25 3 2 1.00 2 0 2 0 0 0 0 0
........................................................................................................CTGGGAGGTTGATGTTTACT................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................CGGGGAGGTGGATGTTTACTTC.............................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0
.........................................................................................................TGGGAGGTGGATGTTTACTTCGA............................................................ 23 2 1 1.00 1 0 0 0 0 0 1 0
..................................................................TGTAAACATCCTACACTCAGCTAC.................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGCTTA.................................................................................................. 24 2 1 1.00 1 0 0 0 1 0 0 0
..................................................................TGTGAACATCCTACACTCAGCTATC................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGTTGTTTACTT............................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................TGTAAACATCCTACACTCAGATATC................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................TGGGAGGTGGATGTTTACTTC.............................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................TGTAAACATACTACACTCAGC..................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................TATAAACATCCTACACTCAGCT.................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTCTT............................................................ 24 2 1 1.00 1 0 0 0 0 0 1 0
..................................................................TGTAAACATCCTACACTCAGCAATC................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0
..................................................................TGTAAACATCCTCGACTAAGCT.................................................................................................... 22 3 4 0.75 3 0 0 1 0 2 0 0
........................................................................................................CTGGGAGGTGGATTTTTACT................................................................ 20 1 3 0.67 2 0 0 0 0 1 1 0
....................................................................AAAACATCCTACACTCAGCTATC................................................................................................. 23 3 5 0.60 3 3 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTAG.............................................................. 22 2 2 0.50 1 0 0 0 1 0 0 0
........................................................................................................CCGGGAGGTGGATGTTTAC................................................................. 19 1 2 0.50 1 0 0 1 0 0 0 0
........................................................................................................CTGGGAGGAGGATGTTTACT................................................................ 20 1 4 0.50 2 0 0 0 1 1 0 0
.........................................................................................................TGGGAGGTGGATGTTTACTAAA............................................................. 22 2 2 0.50 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCCTACACTCAGAC.................................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0
..................................................................TGCAAACATCCTACACTCAGCTCTC................................................................................................. 25 3 2 0.50 1 1 0 0 0 0 0 0
..................................................................TGTAAACATCCTACATTCAGCTATC................................................................................................. 25 3 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATTTTTACTTAA............................................................. 23 2 2 0.50 1 0 0 0 0 1 0 0
........................................................................................................CTGGGAGGTGGATGGTTACTT............................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0
..................................................................TGTACACATCCTACACTCAGCTTC.................................................................................................. 24 3 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTCTACTTAA............................................................. 23 2 2 0.50 1 0 0 0 0 0 1 0
..................................................................TGTAAACATCCTACACTCAGCAT................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................TGTAAACATTCTACACTCAGCA.................................................................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0
..................................................................TGTAAACATCCTACCCTCAGCTTTC................................................................................................. 25 3 2 0.50 1 0 1 0 0 0 0 0
..................................................................TGTAAACATCCTACAATC........................................................................................................ 18 1 11 0.36 4 0 4 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTTTAAA........................................................... 25 3 3 0.33 1 0 0 0 0 0 1 0
........................................................................................................CTGGGAGGTGGATGTTTAATTA.............................................................. 22 2 3 0.33 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCCTGCACTCAG...................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 1 0
........................................................................................................CTGGGAGGTGGATGGTTACT................................................................ 20 1 3 0.33 1 0 0 1 0 0 0 0
..................................................................TGTAAACATCCTCCACTCAGCTTC.................................................................................................. 24 3 3 0.33 1 0 1 0 0 0 0 0
....................................................................TAAACATCCTACACTCAGATC................................................................................................... 21 2 6 0.33 2 0 2 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTAT................................................................. 19 1 4 0.25 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCCTACAC.......................................................................................................... 16 0 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTAA................................................................. 19 1 16 0.25 4 0 0 0 4 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTACTATC............................................................. 23 3 5 0.20 1 1 0 0 0 0 0 0
.........................................................................................................TGGTAGGTGGATGTTTACTTCT............................................................. 22 2 5 0.20 1 0 0 0 1 0 0 0
..................................................................TGTAAACATCCTATACTCAGCTTC.................................................................................................. 24 3 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................CTGGGCGGTGGATGTTTCCT................................................................ 20 2 6 0.17 1 0 0 0 0 0 1 0
........................................................................................................CTGGGAGGTGGATTTTTAC................................................................. 19 1 6 0.17 1 0 0 0 1 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTAATTT.............................................................. 22 2 6 0.17 1 0 0 1 0 0 0 0
...................................................................TTAAACATCCTACACTCAGATC................................................................................................... 22 3 14 0.14 2 2 0 0 0 0 0 0
.........................................................................................................TGGGAGGTGGATGTTTACTTTT............................................................. 22 2 7 0.14 1 0 0 0 0 0 1 0
..................................................................TTTAAACATCCTACACTCAGATC................................................................................................... 23 3 7 0.14 1 0 1 0 0 0 0 0
..................................................................TGTAAACATCCTACACTCAAA..................................................................................................... 21 2 8 0.13 1 0 0 0 0 1 0 0
........................................................................................................CTGGTAGGTGTATGTTTACTTAA............................................................. 23 3 12 0.08 1 0 0 0 0 0 1 0
........................................................................................................CTGTGAGGTGGCTGTTTACTT............................................................... 21 2 18 0.06 1 0 0 0 0 1 0 0
..................................................................TGTAAACATCCTACACTCAATC.................................................................................................... 22 3 18 0.06 1 0 1 0 0 0 0 0
........................................................................................................CTGGGAGGTGGATGTTTATA................................................................ 20 2 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

AATGAATTTCCTGGTATGTTTGAATCATTTCTCAAATTCAGGACGAAATTTGGTTCAAAGTCAAGTACATTTGTAGGATGTGAGTCGACATTATGTACCTAACCGACCCTCCACCTACAAATGAAGTCGACTGAACCTTATAGTTGGTTAATTGTAACTATTTCTAAACCGTTCTTATCATATGTCTC

************************************************(((((..((((((...((((((((((.((.((((((((............))))))))..))))))))))))...)))))))))))...*************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:32 PM