ID:

mml-mir-301a

 Coordinate:

chr16:45399085-45399170 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.3 -26.2 -26.2

Sense Strand Reads

CTGAAGCTTCAACTGATGCAAGATGCTTTTGTGTTCCTTTCCTACTTATTACTGCTAACGAATGCTCTGACTTTATTGCACTACTGTACTTTACAGCTAGCAGTGCAATAGTATTGTCAAAGCATCTGAAAGCAGGATGCACGCCAGAATTTTGATTCTTACCTTACATCTTCCTTCAGTATCAGG

************************************************....((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116845

epididymis		 SRR116839

testes
...............................................................GCTCTGACTTTATTGCACTACT..................................................................................................... 22 0 1 119.00 119 79 17 16 0 6 0 1
....................................................................................................CAGTGCAATAGTATTGTCA................................................................... 19 0 1 25.00 25 16 3 4 0 0 0 2
...............................................................GCTCTGACTTTATTGCACTAC...................................................................................................... 21 0 1 23.00 23 11 8 2 0 2 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGCATT............................................................ 26 1 1 19.00 19 16 2 1 0 0 0 0
...............................................................GCTCTGACTTTATTTCACTACT..................................................................................................... 22 1 1 19.00 19 15 3 1 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGCATC............................................................ 26 0 1 14.00 14 0 0 0 7 0 7 0
...............................................................GCTCTGACTTTATTTCACTAC...................................................................................................... 21 1 1 11.00 11 8 3 0 0 0 0 0
...............................................................GCTCTGACTTTATTGCACTGCT..................................................................................................... 22 1 1 10.00 10 9 1 0 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGCAT............................................................. 25 0 1 10.00 10 10 0 0 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGC............................................................... 23 0 1 8.00 8 4 2 2 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAA.................................................................. 20 0 1 3.00 3 2 0 0 0 1 0 0
...............................................................GCTCTGACTTTATTGCACTGC...................................................................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAG................................................................ 22 0 1 2.00 2 0 1 1 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGCA.............................................................. 24 0 1 2.00 2 0 0 0 0 1 0 1
..............................................................................................................GTATTGTCAAAGCATC............................................................ 16 0 1 2.00 2 0 0 0 2 0 0 0
...............................................................GCTCTGACTTTATTGCACTACTG.................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGT............................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................GCTCTGACTTTATTGCACTTCT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................ATAGTATTGTCAAAGCATC............................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................GCTCTGACTTTGTTGCACTACT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................GCTCTGACTTTATTTCACTA....................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................GCTCTGACTTTATTGCATTACT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAA................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................CAGTGCAATAGTATTGTCAACGCATC............................................................ 26 1 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGATC............................................................. 25 3 2 1.00 2 0 0 0 1 0 1 0
....................................................................................................CATTGCAATAGTATTGTCAAAGCATC............................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGCATTT........................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................GCTCTGACTTTATTTCACTACA..................................................................................................... 22 2 2 1.00 2 1 1 0 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGCATATC.......................................................... 28 2 1 1.00 1 0 0 0 1 0 0 0
...............................................................GCTCTGACTTTATTGCACTACAA.................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................CATTGCAATAGTATTGTCAACGCATC............................................................ 26 2 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................CAGTGCAATAGTATTTTCAAAGCATC............................................................ 26 1 1 1.00 1 0 0 0 1 0 0 0
...............................................................GCTCTGACTTTGTTGCACTAC...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................GCTCTGACTTTATTGCCCTGCT..................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCAAAGTTC............................................................. 25 3 2 0.50 1 0 0 0 0 0 1 0
....................................................................................................CAGTGCAATAGTATTTTCAA.................................................................. 20 1 2 0.50 1 0 0 1 0 0 0 0
....................................................................................................CAGTGCAATAGTATTGTCATC................................................................. 21 2 3 0.33 1 0 0 0 1 0 0 0
....................................................................................................CAGTGCAATAGGATTGTCA................................................................... 19 1 4 0.25 1 1 0 0 0 0 0 0
...............................................................GCTCTGACTTTATTTCCCTAC...................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................CAGTTCAATAGTATTGTCA................................................................... 19 1 4 0.25 1 1 0 0 0 0 0 0
...............................................................GCTCTGACTTTATTGCACTACAAA................................................................................................... 24 3 4 0.25 1 0 1 0 0 0 0 0

Anti-sense strand reads

GACTTCGAAGTTGACTACGTTCTACGAAAACACAAGGAAAGGATGAATAATGACGATTGCTTACGAGACTGAAATAACGTGATGACATGAAATGTCGATCGTCACGTTATCATAACAGTTTCGTAGACTTTCGTCCTACGTGCGGTCTTAAAACTAAGAATGGAATGTAGAAGGAAGTCATAGTCC

****************************************************....((((..((.(((((.((((.((((((((((.((((........)).)).))))))))))....)))).))))).))..))))************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM