ID:

mml-mir-29c

Coordinate:

chr1:163153877-163153964 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.0 -34.3

Sense Strand Reads

ACTTGCCACCTGGACTGTCGAGGTGCAGACCCTGGGAGCACCACTGGCCCATCTCTTACACAGGCTGACCGATTTCTCCTGGTGTTCAGAGTCTGTTTTTGTCTAGCACCATTTGAAATCGGTTATGATGTAGGGGGAAAAGCAGCAGCCTCGAAGTCTCATGCCAAGTCTGGGCGGCAGCAGCCTGT

**************************************************.(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).)))))))))...************************************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
SRR116842

seminal vesicle
SRR116841

prostate
SRR116840

epididymis
SRR116839

testes
SRR116845

epididymis
SRR116844

epididymis
.......................................................................................................TAGCACCATTTGAAATCGGTTA............................................................... 22 0 1 103814.00 103814 41966 30022 17988 13180 658 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTT................................................................ 21 0 1 9568.00 9568 3717 2884 1333 1563 71 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTT............................................................... 22 1 1 6033.00 6033 1266 1851 2219 666 30 1 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAA.............................................................. 23 1 1 2225.00 2225 555 934 434 287 13 0 2
.......................................................................................................TAGCACCATTTGAAATCGGTTAT.............................................................. 23 0 1 1103.00 1103 195 275 501 122 6 4 0
.......................................................................................................TAGCACCATTTGAAATCGTTTA............................................................... 22 1 1 933.00 933 483 7 282 153 7 1 0
.......................................................................................................TAGCACCATTTGAAATCGGTAA............................................................... 22 1 1 829.00 829 224 352 90 162 1 0 0
.......................................................................................................TAGCACCATTTGAAATCTGTTA............................................................... 22 1 1 702.00 702 253 13 278 157 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTATC............................................................. 24 1 1 472.00 472 0 0 0 0 0 356 116
.......................................................................................................TAGCACCATTTGAAATCGGT................................................................. 20 0 1 447.00 447 146 147 65 87 2 0 0
.......................................................................................................TAGCACCATTTTAAATCGGTTA............................................................... 22 1 1 434.00 434 288 10 72 60 4 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTTT.............................................................. 23 1 1 284.00 284 16 36 219 12 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGG.................................................................. 19 0 1 244.00 244 63 86 44 50 0 0 1
.......................................................................................................TAGCACCATTTGAAATCGGTTAATC............................................................ 25 3 1 207.00 207 0 0 0 0 0 142 65
.......................................................................................................TAGCACCATTTGAAATCGGTTG............................................................... 22 1 1 204.00 204 82 77 20 25 0 0 0
.......................................................................................................TAGCACCATTTCAAATCGGTTA............................................................... 22 1 1 168.00 168 162 1 0 5 0 0 0
.......................................................................................................TAGCACCATTTGAAATAGGTTA............................................................... 22 1 1 123.00 123 44 17 45 16 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTA................................................................ 21 1 1 122.00 122 23 55 17 27 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGTTT................................................................ 21 1 1 121.00 121 63 4 25 29 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGATC............................................................... 22 2 1 120.00 120 0 0 0 0 0 61 59
.......................................................................................................TAGCACCATTTGAAATCGGTTTA.............................................................. 23 2 1 115.00 115 11 53 43 8 0 0 0
.....................................................................................................AATAGCACCATTTGAAATCGGTTA............................................................... 24 2 1 111.00 111 45 30 24 10 2 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTATC.............................................................. 23 3 5 98.60 493 0 0 0 0 0 350 143
.......................................................................................................TAGCACCATTTGACATCGGTTA............................................................... 22 1 1 92.00 92 34 25 21 11 1 0 0
.......................................................................................................TAGCACCATTTGAAATCTGTT................................................................ 21 1 1 88.00 88 35 3 29 21 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGGTA............................................................... 22 1 1 88.00 88 35 32 13 8 0 0 0
.......................................................................................................TAGCACCATTCGAAATCGGTTA............................................................... 22 1 1 74.00 74 31 21 12 4 6 0 0
.......................................................................................................TAGCACCATATGAAATCGGTTA............................................................... 22 1 2 69.00 138 81 19 23 15 0 0 0
.......................................................................................................CAGCACCATTTGAAATCGGTTA............................................................... 22 1 1 64.00 64 17 25 12 10 0 0 0
.......................................................................................................TAGCACCATTTAAAATCGGTTA............................................................... 22 1 1 60.00 60 39 11 9 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGTTTT............................................................... 22 2 1 57.00 57 18 0 32 7 0 0 0
.......................................................................................................TAGCACTATTTGAAATCGGTTA............................................................... 22 1 1 57.00 57 29 13 9 6 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGGTT................................................................ 21 1 1 55.00 55 27 3 17 8 0 0 0
.......................................................................................................TAGCACCATTTGCAATCGGTTA............................................................... 22 1 1 55.00 55 18 17 10 10 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGAA................................................................ 21 2 1 53.00 53 5 14 7 26 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGA................................................................. 20 1 1 51.00 51 5 13 9 24 0 0 0
.......................................................................................................TAGCACCATTTGGAATCGGTTA............................................................... 22 1 1 50.00 50 19 21 4 6 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTC............................................................... 22 1 1 46.00 46 15 17 8 3 1 2 0
.........................................................................................................GCACCATTTGAAATCGGTTATT............................................................. 22 1 1 45.00 45 11 23 5 6 0 0 0
.......................................................................................................TAGCACCATTTGAGATCGGTTA............................................................... 22 1 1 44.00 44 14 14 10 6 0 0 0
.......................................................................................................TAGCACCACTTGAAATCGGTTA............................................................... 22 1 1 44.00 44 22 7 7 8 0 0 0
.......................................................................................................TAGCATCATTTGAAATCGGTTA............................................................... 22 1 1 43.00 43 13 16 4 5 5 0 0
.......................................................................................................TAGCACTATTTGAAATCGGTT................................................................ 21 1 1 42.00 42 23 8 9 2 0 0 0
.......................................................................................................TAGCACCATTTGAAGTCGGTTA............................................................... 22 1 1 42.00 42 9 18 10 4 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGCTA............................................................... 22 1 1 41.00 41 17 5 10 9 0 0 0
.......................................................................................................TAGCACCATTTGAAATCAGTTA............................................................... 22 1 1 40.00 40 16 11 6 7 0 0 0
.......................................................................................................TAGCACCATTTGAACTCGGTTA............................................................... 22 1 1 40.00 40 17 22 0 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATTGGTTA............................................................... 22 1 1 38.00 38 13 16 3 6 0 0 0
.......................................................................................................TAGTACCATTTGAAATCGGTTA............................................................... 22 1 1 38.00 38 15 11 4 7 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTATT............................................................. 24 1 1 38.00 38 1 0 19 4 0 8 6
.......................................................................................................TAGCACCCTTTGAAATCGGTTA............................................................... 22 1 1 36.00 36 8 18 5 4 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTCA............................................................... 22 1 1 36.00 36 16 9 6 5 0 0 0
......................................................................................................CTAGCACCATTTGAAATCGGTTA............................................................... 23 0 1 35.00 35 10 16 6 2 1 0 0
.......................................................................................................TGGCACCATTTGAAATCGGTTA............................................................... 22 1 1 35.00 35 6 9 14 6 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGGTTT............................................................... 22 2 1 34.00 34 5 0 26 3 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAAA............................................................. 24 2 2 33.00 66 30 16 10 7 3 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAG.............................................................. 23 1 1 33.00 33 10 16 2 5 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGTTTAA.............................................................. 23 2 1 33.00 33 18 0 6 8 0 0 1
.......................................................................................................TAGCCCCATTTGAAATCGGTTA............................................................... 22 1 1 31.00 31 13 10 5 2 1 0 0
.......................................................................................................TAACACCATTTGAAATCGGTTA............................................................... 22 1 1 29.00 29 12 12 2 3 0 0 0
.......................................................................................................TATCACCATTTGAAATCGGTTA............................................................... 22 1 1 28.00 28 13 4 7 4 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGAAA............................................................... 22 2 1 27.00 27 3 13 6 5 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTAATC............................................................. 24 2 1 27.00 27 0 0 0 0 0 25 2
.......................................................................................................TAGCACCATTTGAAATCTGTTATC............................................................. 24 2 1 27.00 27 0 0 0 0 0 18 9
......................................................................................................CTAGCACCATTTGAAATCGGTT................................................................ 22 0 1 26.00 26 12 1 8 3 2 0 0
.......................................................................................................TAGCACCGTTTGAAATCGGTTA............................................................... 22 1 1 26.00 26 13 10 3 0 0 0 0
.......................................................................................................TAGCGCCATTTGAAATCGGTTA............................................................... 22 1 1 26.00 26 5 14 6 1 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGTTTA............................................................... 22 2 3 25.67 77 39 0 29 9 0 0 0
.......................................................................................................TAGCACCATTTGTAATCGGTTA............................................................... 22 1 1 24.00 24 15 2 3 4 0 0 0
.......................................................................................................TCGCACCATTTGAAATCGGTTA............................................................... 22 1 1 24.00 24 6 14 3 1 0 0 0
.......................................................................................................TACCACCATTTGAAATCGGTTA............................................................... 22 1 1 24.00 24 14 7 1 2 0 0 0
.......................................................................................................TAGCACCATTTGAAACCGGTTA............................................................... 22 1 1 23.00 23 15 7 0 1 0 0 0
.......................................................................................................TAGCACCTTTTGAAATCGGTTA............................................................... 22 1 1 23.00 23 9 10 3 1 0 0 0
.........................................................................................................GCACCATTTGAAATCGGTTA............................................................... 20 0 1 22.00 22 5 8 3 5 1 0 0
.................................................................TGACCGATTTCTCCTGGTGTT...................................................................................................... 21 0 1 22.00 22 7 9 4 2 0 0 0
...................................................................ACCGATTTCTCCTGGTGTTCAGAATC............................................................................................... 26 1 1 20.00 20 0 0 0 0 0 13 7
.......................................................................................................TAGCAACATTTGAAATCGGTTA............................................................... 22 1 1 20.00 20 11 0 3 3 3 0 0
.......................................................................................................TAGCACCATTTGCAATCGGTT................................................................ 21 1 1 20.00 20 5 6 6 3 0 0 0
.......................................................................................................TAGCACCATATGAAATCGGTT................................................................ 21 1 2 19.50 39 21 4 5 9 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTATC................................................................................................... 24 3 2 19.50 39 0 0 0 0 0 19 20
.......................................................................................................TAGCACCATTTGAAATCGGTAT............................................................... 22 2 4 18.00 72 8 30 19 14 0 0 1
.......................................................................................................TAGCACCATTTGAAATCGCTTA............................................................... 22 1 1 18.00 18 12 2 3 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATAGGTT................................................................ 21 1 1 17.00 17 9 1 5 1 1 0 0
...................................................................ACCGATTTCTCCTGGTGTTCAG................................................................................................... 22 0 1 17.00 17 10 2 3 2 0 0 0
.......................................................................................................AAGCACCATTTGAAATCGGTTA............................................................... 22 1 1 17.00 17 7 8 2 0 0 0 0
.......................................................................................................TAGCACCATTTCAAATCGGTT................................................................ 21 1 1 17.00 17 17 0 0 0 0 0 0
.......................................................................................................TAGCACCATGTGAAATCGGTTA............................................................... 22 1 2 16.50 33 16 8 7 2 0 0 0
........................................................................................................AGCACCATTTGAAATCGGTTA............................................................... 21 0 1 16.00 16 7 7 2 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGATA............................................................... 22 1 1 16.00 16 6 6 1 2 1 0 0
...........................................................................................................ACCATTTGAAATCGGTTA............................................................... 18 0 1 16.00 16 2 14 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCTGTTAA.............................................................. 23 2 1 15.00 15 3 2 8 2 0 0 0
.......................................................................................................TAGCACCATTTGAAATCG................................................................... 18 0 1 15.00 15 3 6 3 3 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTTTT............................................................. 24 2 2 15.00 30 1 5 24 0 0 0 0
.......................................................................................................TAGCACCATTTGAAAACGGTTA............................................................... 22 1 1 15.00 15 4 9 1 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGTTTAT.............................................................. 23 1 1 15.00 15 3 0 11 1 0 0 0
.......................................................................................................TAGCACCATATGAAATAGGTTA............................................................... 22 2 3 14.00 42 22 1 16 3 0 0 0
.......................................................................................................TAGCACCAATTGAAATCGGTTA............................................................... 22 1 1 14.00 14 1 7 4 2 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAC.............................................................. 23 1 1 14.00 14 4 4 3 2 0 1 0
.......................................................................................................TAGCACCATTAGAAATCGGTTA............................................................... 22 1 1 14.00 14 2 7 1 0 4 0 0
..................................................................GACCGATTTCTCCTGGTGTT...................................................................................................... 20 0 1 14.00 14 5 6 0 3 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTATTT............................................................ 25 2 1 14.00 14 0 0 13 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCTGTTT............................................................... 22 2 5 13.40 67 6 0 49 12 0 0 0
.......................................................................................................TAGAACCATTTGAAATCGGTTA............................................................... 22 1 1 13.00 13 2 3 3 2 3 0 0
......................................................................................................ATAGCACCATTTGAAATCGGTTA............................................................... 23 1 1 13.00 13 5 2 4 1 1 0 0
.......................................................................................................TAGCATCATTTGAAATCGGTT................................................................ 21 1 1 13.00 13 7 3 0 2 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGAT................................................................ 21 1 1 13.00 13 1 3 2 6 0 1 0
.......................................................................................................TAGCTCCATTTGAAATCGGTTA............................................................... 22 1 1 12.00 12 3 4 2 1 2 0 0
...................................................................ACCGATTTCTCCTGGTGTTCAGATC................................................................................................ 25 2 1 12.00 12 0 0 0 0 0 8 4
.........................................................................................................GCACCATTTGAAATCGGTTACT............................................................. 22 2 1 12.00 12 3 7 1 1 0 0 0
.......................................................................................................TAGCACCATTTGACATCGGTT................................................................ 21 1 1 12.00 12 2 3 2 5 0 0 0
...................................................................................................GGTGTAGCACCATCTGAAATCGGTTA............................................................... 26 3 2 12.00 24 6 10 3 4 1 0 0
.......................................................................................................TAGCAGCATTTGAAATCGGTTA............................................................... 22 1 1 12.00 12 2 3 0 2 5 0 0
......................................................................................................ATAGCACCATTTGAAATCGGTT................................................................ 22 1 1 11.00 11 6 5 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGATTA............................................................... 22 1 1 11.00 11 1 7 0 3 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTAAA.............................................................. 23 2 1 11.00 11 2 4 1 3 0 0 1
..........................................................................................................CACCATTTGAAATCGGTTA............................................................... 19 0 1 11.00 11 3 3 5 0 0 0 0
.......................................................................................................TAGCACCATTTGAATTCGGTTA............................................................... 22 1 1 11.00 11 3 7 1 0 0 0 0
.........................................................................................................GCACCATTTGAAATCGGTTAT.............................................................. 21 0 1 11.00 11 4 1 3 3 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGGT................................................................ 21 1 1 11.00 11 4 5 1 0 1 0 0
.......................................................................................................TAGCACCATTTGAAATCGGCT................................................................ 21 1 1 10.00 10 3 5 1 1 0 0 0
.......................................................................................................TAGCACAATTTGAAATCGGTTA............................................................... 22 1 1 10.00 10 4 3 1 1 1 0 0
.......................................................................................................TAGCACCATTTGAAATCTGTTAT.............................................................. 23 1 1 10.00 10 2 0 7 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCCGTTA............................................................... 22 1 1 10.00 10 7 1 2 0 0 0 0
......................................................................................................CTAGCACCATTTGAAATCGGTTT............................................................... 23 1 1 10.00 10 3 1 2 3 1 0 0
.......................................................................................................TAGCACTATTTGAAATCGGTTATC............................................................. 24 2 1 10.00 10 0 0 0 0 0 5 5
.......................................................................................................TAGCACCATTTGAAAT..................................................................... 16 0 6 9.33 56 3 28 13 12 0 0 0
.......................................................................................................TAGCACCATTTGCAATCGGTTT............................................................... 22 2 1 9.00 9 2 0 6 0 1 0 0
.......................................................................................................TTGCACCATTTGAAATCGGTTA............................................................... 22 1 1 9.00 9 0 0 9 0 0 0 0
..................................................................GACCGATTTCTCCTGGTGTTCA.................................................................................................... 22 0 1 9.00 9 3 4 1 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGCTT............................................................... 22 2 1 9.00 9 2 3 4 0 0 0 0
...................................................................ACCGATTTCTCCTGGTGTTCA.................................................................................................... 21 0 1 9.00 9 3 2 1 2 1 0 0
.......................................................................................................TAGCACGATTTGAAATCGGTTA............................................................... 22 1 1 9.00 9 3 4 0 2 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGGTTAA.............................................................. 23 2 1 9.00 9 2 1 3 3 0 0 0
.......................................................................................................TAGCACCATTTGAAATCTTTTA............................................................... 22 2 4 8.75 35 12 0 9 14 0 0 0
.......................................................................................................AAGCACCATTTGAAATCGGTT................................................................ 21 1 1 8.00 8 2 1 4 1 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTTATC.................................................................................................. 25 3 1 8.00 8 0 0 0 0 0 2 6
.......................................................................................................TAGGACCATTTGAAATCGGTTA............................................................... 22 1 1 8.00 8 4 3 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGGTT............................................................... 22 2 1 8.00 8 0 4 4 0 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTA..................................................................................................... 22 1 1 8.00 8 2 6 0 0 0 0 0
..................................................................GACCGATTTCTCCTGGTGTTC..................................................................................................... 21 0 1 8.00 8 4 4 0 0 0 0 0
.....................................................................................................AATAGCACCATTTGAAATCGGTT................................................................ 23 2 1 7.00 7 3 2 2 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTATTTT........................................................... 26 2 1 7.00 7 0 0 7 0 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTCATC.................................................................................................. 25 2 1 7.00 7 0 0 0 0 0 4 3
.......................................................................................................TAGCACCATTTAAAATCGGTT................................................................ 21 1 1 7.00 7 6 0 0 1 0 0 0
.......................................................................................................TAGCACCATTTGGAATCGGTT................................................................ 21 1 1 7.00 7 2 3 0 2 0 0 0
..........................................................................................................CACCATTTGAAATCGGTT................................................................ 18 0 1 7.00 7 2 2 1 2 0 0 0
.......................................................................................................TAGCACCATTCGAAATCGGTT................................................................ 21 1 1 7.00 7 3 2 1 1 0 0 0
.......................................................................................................TAGCACCATTTGGAATCGGTTT............................................................... 22 2 1 7.00 7 0 6 0 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGTT................................................................. 20 1 2 6.50 13 5 2 4 2 0 0 0
.......................................................................................................TAGCACCATTTGATATCGGTTA............................................................... 22 1 1 6.00 6 1 5 0 0 0 0 0
..........................................................................................................CACCATTTGAAATCGGTTAT.............................................................. 20 0 1 6.00 6 3 2 0 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTCTC............................................................. 24 2 1 6.00 6 0 0 0 0 0 4 2
.......................................................................................................TAGCACCATTTGAAATGGGTTA............................................................... 22 1 1 6.00 6 3 2 0 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTGA.............................................................. 23 2 1 6.00 6 1 4 0 1 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGGTTAT.............................................................. 23 1 1 6.00 6 2 1 3 0 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGTTT................................................................ 21 2 3 6.00 18 10 0 6 2 0 0 0
.......................................................................................................TAGCGCCATTTGAAATCGGTT................................................................ 21 1 1 6.00 6 1 3 0 2 0 0 0
.......................................................................................................TAGCACCCTTTGAAATCGGTT................................................................ 21 1 1 6.00 6 0 4 0 1 1 0 0
...................................................................ACCGATTTCTCCTGGTGTTCAGTATC............................................................................................... 26 2 1 6.00 6 0 0 0 0 0 3 3
..........................................................................................................CACCATTTGAAATCGGTTATT............................................................. 21 1 2 6.00 12 1 6 1 4 0 0 0
.........................................................................................................GCACCATTTGAAATCGGTT................................................................ 19 0 1 6.00 6 3 2 1 0 0 0 0
.......................................................................................................GAGCACCATTTGAAATCGGTTA............................................................... 22 1 1 6.00 6 1 1 1 3 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTCAGATC................................................................................................ 27 2 1 6.00 6 0 0 0 0 0 4 2
........................................................................................................AGCACCATTTGAAATCGGTT................................................................ 20 0 1 6.00 6 2 2 1 1 0 0 0
...................................................................ACCGATTTCTCCTGGTGTTCAGA.................................................................................................. 23 0 1 6.00 6 4 1 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTTTTTT........................................................... 26 3 3 5.67 17 0 0 17 0 0 0 0
...................................................................................................AGACTAGCACCATCTGAAATCGGTTA............................................................... 26 3 2 5.50 11 1 2 4 4 0 0 0
.......................................................................................................CAGCACCATTTGAAATCGGTT................................................................ 21 1 1 5.00 5 3 1 0 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTAG............................................................... 22 2 1 5.00 5 1 2 0 2 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGG................................................................. 20 1 1 5.00 5 1 2 1 1 0 0 0
.......................................................................................................TAGCACCATTTGACCTCGGTTA............................................................... 22 2 1 5.00 5 1 3 0 1 0 0 0
....................................................................................................GGGTAGCACCATCTGAAATCGGTTA............................................................... 25 3 2 5.00 10 8 0 1 1 0 0 0
.......................................................................................................TAGCACCATTTGAGATCGGTT................................................................ 21 1 1 5.00 5 2 0 0 2 1 0 0
.................................................................TGACCGATTTCTCCTGGTGTTAATC.................................................................................................. 25 3 1 5.00 5 0 0 0 0 0 4 1
.......................................................................................................TAGCACCATTTGAACTCGGTT................................................................ 21 1 1 5.00 5 2 2 0 1 0 0 0
.......................................................................................................TAACACCATTTGAAATCGGTT................................................................ 21 1 1 5.00 5 3 1 1 0 0 0 0
.............................................................................................................CATTTGAAATCGGTTA............................................................... 16 0 1 5.00 5 0 3 1 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGATC................................................................ 21 2 1 5.00 5 0 0 0 0 0 3 2
.......................................................................................................TAGAACCATTTGAAATCGGTT................................................................ 21 1 1 5.00 5 3 1 0 1 0 0 0
........................................................................................................AGCACCATTTGAAATCGGTTAT.............................................................. 22 0 1 5.00 5 3 1 0 1 0 0 0
.......................................................................................................TAGCACCTTTTGAAATCGGTT................................................................ 21 1 1 5.00 5 1 2 0 1 1 0 0
.......................................................................................................TAGCACCATTTGAAA...................................................................... 15 0 13 4.54 59 17 22 11 7 1 0 1
.......................................................................................................TAGCACCATTTGAAATAGGTTT............................................................... 22 2 2 4.50 9 0 3 6 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCAGTT................................................................ 21 1 3 4.33 13 8 2 2 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATC.................................................................... 17 0 3 4.33 13 1 6 4 2 0 0 0
.......................................................................................................TACCACCATTTGAAATCGGTT................................................................ 21 1 1 4.00 4 2 2 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGCTT................................................................ 21 1 1 4.00 4 2 0 1 1 0 0 0
.......................................................................................................TAGCACCATTTCAAATCGGTTT............................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGTTTATC............................................................. 24 2 1 4.00 4 0 0 0 0 0 2 2
.......................................................................................................TAGCACCATTGGAAATCGGTTA............................................................... 22 1 1 4.00 4 2 2 0 0 0 0 0
.......................................................................................................TATCACCATTTGAAATCGGTT................................................................ 21 1 1 4.00 4 1 0 2 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTCA.............................................................. 23 2 1 4.00 4 0 1 3 0 0 0 0
.......................................................................................................TAGCACCAATTGAAATCGGTTT............................................................... 22 2 1 4.00 4 0 1 3 0 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTT..................................................................................................... 22 1 1 4.00 4 1 2 1 0 0 0 0
.......................................................................................................TAGCACCATTCGAAATCGGTTT............................................................... 22 2 1 4.00 4 1 1 0 2 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTCAGAGTATC............................................................................................. 30 2 1 4.00 4 0 0 0 0 0 4 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAAT............................................................. 24 2 1 4.00 4 0 1 3 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTGA............................................................... 22 1 1 4.00 4 1 2 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTACTC............................................................ 25 3 1 4.00 4 0 0 0 0 0 2 2
.......................................................................................................TAGCACCATTTGACATCGTTTA............................................................... 22 2 1 4.00 4 2 0 2 0 0 0 0
.......................................................................................................TAGCACTATTTGAAATCGGTTT............................................................... 22 2 1 4.00 4 2 2 0 0 0 0 0
.......................................................................................................TAGCACCATCTGAAATCGGTTAAG............................................................. 24 2 2 3.50 7 3 0 1 3 0 0 0
...................................................................................................CGACTAGCACCATCTGAAATCGGTTA............................................................... 26 3 2 3.50 7 3 1 1 2 0 0 0
.....................................................................................................AATAGCACCATTTGAAATCGGTTT............................................................... 24 3 2 3.50 7 5 1 1 0 0 0 0
..................................................................................................TGGTGTAGCACCATCTGAAATCGGTTA............................................................... 27 3 2 3.50 7 2 1 4 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTATTTTT.......................................................... 27 3 1 3.00 3 0 0 2 1 0 0 0
.......................................................................................................TAGCACCAGTTGAAATCGGTTA............................................................... 22 1 1 3.00 3 0 1 0 2 0 0 0
..................................................................................................CGGACTAGCACCATTTGAAATCGGTTA............................................................... 27 3 1 3.00 3 1 2 0 0 0 0 0
.......................................................................................................TAGCACCACTTGAAATCGGTT................................................................ 21 1 1 3.00 3 0 2 1 0 0 0 0
........................................................................................................AGCACCATTTGAAATCGGTTT............................................................... 21 1 1 3.00 3 0 1 2 0 0 0 0
.......................................................................................................TAGCATCATTTGAAATCGGTTT............................................................... 22 2 1 3.00 3 0 1 0 0 2 0 0
...................................................................................................CGGCTAGCACCATCTGAAATCGGTTA............................................................... 26 3 2 3.00 6 4 0 0 2 0 0 0
..................................................................GACCGATTTCTCCTGGTGTTCAG................................................................................................... 23 0 1 3.00 3 2 0 0 1 0 0 0
..................................................................GACCGATTTCTCCTGGTGTTCAGTATC............................................................................................... 27 2 1 3.00 3 0 0 0 0 0 3 0
......................................................................................................CTAGCACCATTTGAAATCGGTTAA.............................................................. 24 1 1 3.00 3 1 2 0 0 0 0 0
..................................................................GACCGATTTCTCCTGGTGTTT..................................................................................................... 21 1 1 3.00 3 1 2 0 0 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGGTTTT.............................................................. 23 2 1 3.00 3 1 0 2 0 0 0 0
.......................................................................................................TAGCGCCATTTGAAATCGGTTT............................................................... 22 2 1 3.00 3 2 1 0 0 0 0 0
.......................................................................................................TAGCACCATTTGACATCGGTTT............................................................... 22 2 2 3.00 6 3 0 2 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGTTTTT.............................................................. 23 2 1 3.00 3 0 0 3 0 0 0 0
.......................................................................................................TAGCACCATTTGATATCGGTTAA.............................................................. 23 2 1 3.00 3 0 3 0 0 0 0 0
.........................................................................................................GCACCATTTGAAATCGGTTT............................................................... 20 1 1 3.00 3 1 1 1 0 0 0 0
.......................................................................................................TAGCACCATTCGAAATCGGT................................................................. 20 1 1 3.00 3 1 1 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAACCGGTT................................................................ 21 1 1 3.00 3 1 1 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATTGGTT................................................................ 21 1 1 3.00 3 2 1 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTAAT.............................................................. 23 1 1 3.00 3 0 1 1 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAAAATC.......................................................... 27 3 2 3.00 6 0 0 0 0 0 4 2
..................................................................................................CGGTGTAGCACCATTTGAAATCGGTTA............................................................... 27 3 1 3.00 3 0 3 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAATTCGGTT................................................................ 21 1 1 3.00 3 1 2 0 0 0 0 0
.......................................................................................................TAGCATCATTTGAAATCGGTTAT.............................................................. 23 1 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................TGGCACCATTTGAAATCGGTTT............................................................... 22 2 1 3.00 3 0 1 1 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAAGATC.......................................................... 27 2 1 3.00 3 0 0 0 0 0 3 0
.......................................................................................................TAGCACCCTTTGAAATCGGTTT............................................................... 22 2 1 3.00 3 1 1 0 1 0 0 0
.......................................................................................................TAGCACCATTTGAAGTCGGTTT............................................................... 22 2 1 3.00 3 1 2 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTGT.............................................................. 23 1 1 3.00 3 0 3 0 0 0 0 0
.......................................................................................................TAGCACCATTTTAAATCGGT................................................................. 20 1 1 3.00 3 1 0 2 0 0 0 0
.......................................................................................................TAGCACCATATGAAATCGGTTT............................................................... 22 2 2 3.00 6 0 2 3 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGCAA............................................................... 22 2 1 3.00 3 1 1 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGGTAT.............................................................. 23 1 1 3.00 3 0 0 3 0 0 0 0
.........................................................................................................GCACCATTTGAAATCGGTTTTT............................................................. 22 2 3 2.67 8 2 4 2 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCTGTAA............................................................... 22 2 3 2.67 8 1 0 2 5 0 0 0
.......................................................................................................TAGCACCATCTGAAATCGGTTACGG............................................................ 25 3 2 2.50 5 1 0 2 2 0 0 0
.......................................................................................................TAGCACCATGTGAAATCGGTT................................................................ 21 1 2 2.50 5 3 0 0 2 0 0 0
......................................................................................................CTAGCACCATATGAAATCGGTT................................................................ 22 1 2 2.50 5 0 1 3 0 1 0 0
.......................................................................................................TAGCACCATCTGAAATCGGTTAAGATC.......................................................... 27 3 2 2.50 5 0 0 0 0 0 5 0
.......................................................................................................TAGCACCACTTGAAATCGGTTT............................................................... 22 2 2 2.50 5 1 0 3 1 0 0 0
..................................................................GACCGATTTCTCCTGGTGTTATC................................................................................................... 23 3 2 2.50 5 0 0 0 0 0 2 3
......................................................................................................CTAGCACCATTTGAAATCAGTTATC............................................................. 25 2 2 2.50 5 0 0 0 0 0 4 1
.......................................................................................................TAGCACCATTTGAAATCGT.................................................................. 19 1 2 2.50 5 0 2 3 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTATATC........................................................... 26 3 2 2.50 5 0 0 0 0 0 5 0
.......................................................................................................TAGCACCATTTGAAATCTGT................................................................. 20 1 3 2.33 7 5 0 0 2 0 0 0
..........................................................................................................CACCATTTGAAATCGGTTACT............................................................. 21 2 3 2.33 7 3 4 0 0 0 0 0
.......................................................................................................TAGCACCATATGAAATAGGTT................................................................ 21 2 7 2.14 15 7 0 5 3 0 0 0
.......................................................................................................TAGCACCATTTGAAAGCGGTTA............................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTC................................................................ 21 1 1 2.00 2 0 0 0 1 0 1 0
.......................................................................................................TAGCACCATTTGAGATCGGTTT............................................................... 22 2 1 2.00 2 0 1 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCAGTTAT.............................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGCACCATTTTAAATCTGTTA............................................................... 22 2 4 2.00 8 3 0 3 2 0 0 0
.......................................................................................................TAGCACCATTTGACATCGGTTAT.............................................................. 23 1 1 2.00 2 0 0 2 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTACT............................................................. 24 2 1 2.00 2 1 0 0 1 0 0 0
...................................................................................................AATGTAGCACCATTTGAAATCGGTTA............................................................... 26 3 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................ATGTAGCACCATTTGAAATCGGTTA............................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGCACCAATTGAAATCGGTT................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGCACCATTTCAAATCGGTTAA.............................................................. 23 2 1 2.00 2 1 0 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTTG.............................................................. 23 2 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................TAGCACAATTTGAAATCGGTT................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGCACCATTCGAAATCGGTTATC............................................................. 24 2 1 2.00 2 0 0 0 0 0 2 0
....................................................................................................GAGTAGCACCATTTGAAATCGGTTA............................................................... 25 2 1 2.00 2 0 2 0 0 0 0 0
.................................................................TGACCGATTTCTCCTGGTGTTC..................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAGTCGGTT................................................................ 21 1 1 2.00 2 1 0 1 0 0 0 0
.......................................................................................................TAGCACCATTTGCAATCGGTTG............................................................... 22 2 1 2.00 2 0 1 1 0 0 0 0
...................................................................................................AGGATAGCACCATTTGAAATCGGTTA............................................................... 26 3 1 2.00 2 0 1 1 0 0 0 0
.......................................................................................................TAGCACCTTTTGAAATCGGTTATC............................................................. 24 2 1 2.00 2 0 0 0 0 0 2 0
...................................................................................................CGGTTAGCACCATTTGAAATCGGTTA............................................................... 26 3 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................TAGCACCGTTTGAAATCGGTT................................................................ 21 1 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................................TAGCACCCTTTGCAATCGGTTA............................................................... 22 2 1 2.00 2 0 0 1 1 0 0 0
.......................................................................................................TAGCACCATTTGATATCGGTAATC............................................................. 24 3 1 2.00 2 0 0 0 0 0 2 0
.......................................................................................................TAGCACCATTTGACATCGGT................................................................. 20 1 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................................TAGCACCATATGAAATCGGTTAA.............................................................. 23 2 2 2.00 4 1 1 1 1 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGC................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATATGTTA............................................................... 22 2 2 2.00 4 0 0 3 1 0 0 0
..............................................................................................................ATTTGAAATCGGTTA............................................................... 15 0 2 2.00 4 0 3 1 0 0 0 0
.......................................................................................................CAGCACCATTTGAAATCGGTTATC............................................................. 24 2 1 2.00 2 0 0 0 0 0 1 1
.......................................................................................................TAGCACCATTTGCACTCGGTTA............................................................... 22 2 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................................GAGCACCATTTGAAATCGGTT................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................TTAGCACCATTTGAAATCGGTTA............................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTAAC............................................................. 24 2 1 2.00 2 0 0 0 0 0 1 1
.......................................................................................................TAGCACTATTTGAAATCGGTTAT.............................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................CACCTAGCACCATTTGAAATCGGTTA............................................................... 26 3 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TAGTACCATTTGAAATCGGTTT............................................................... 22 2 1 2.00 2 1 0 1 0 0 0 0
.......................................................................................................TAGCACCGTTTGAAATCGGTTAA.............................................................. 23 2 1 2.00 2 0 1 1 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTCT.............................................................. 23 1 1 2.00 2 0 0 2 0 0 0 0
.......................................................................................................TAGCACCATTTGAGATCGGTTAA.............................................................. 23 2 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTTC.............................................................. 23 2 1 2.00 2 0 0 0 0 0 2 0
..................................................................................................AGGACTAGCACCATTTGAAATCGGTTA............................................................... 27 3 1 2.00 2 0 0 1 0 1 0 0
.......................................................................................................TAGGACCATTTGAAATCGGTT................................................................ 21 1 1 2.00 2 0 0 1 1 0 0 0
.......................................................................................................TAGCACCATTTGCAATCGGTTAA.............................................................. 23 2 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................................TAGCACCATTTGAAATCGGTTACC............................................................. 24 2 1 2.00 2 0 0 0 0 0 2 0
..................................................................GACCGATTTCTCCTGGTGTTCAGAATC............................................................................................... 27 1 1 2.00 2 0 0 0 0 0 1 1
...................................................................ACCGATTTCTCCTGGTGTTCAGAT................................................................................................. 24 1 1 2.00 2 0 0 0 0 0 2 0
.......................................................................................................TAGCACGATTTGAAATCGGTTAA.............................................................. 23 2 1 2.00 2 0 2 0 0 0 0 0

Anti-sense strand reads

TGAACGGTGGACCTGACAGCTCCACGTCTGGGACCCTCGTGGTGACCGGGTAGAGAATGTGTCCGACTGGCTAAAGAGGACCACAAGTCTCAGACAAAAACAGATCGTGGTAAACTTTAGCCAATACTACATCCCCCTTTTCGTCGTCGGAGCTTCAGAGTACGGTTCAGACCCGCCGTCGTCGGACA

************************************************.(((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).)))))))))...**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
............CTACCAGCTCCACGTCTGGG............................................................................................................................................................ 20 2 5 0.20 1 1

Generated: 09/01/2015 at 12:03 PM