ID:

mml-mir-224

 Coordinate:

chrX:151176186-151176266 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.9 -44.6

Sense Strand Reads

CAGATTGGTGGGTACCCATCATCAAAAGTGACAGAGAAGATAAGGCCCAGGGGCTTTCAAGTCACTAGTGGTTCCGTTTAGTAGATGATTGTGCATTGTTTCAAAATGGTGCCCTAGTGACTACAAAGCCCCAGAGGCAGCATCATCACCAAAGCGATGACAGTAGGTAAGCACCAGACCT

******************************************..(((..((((((((..(((((((((.(((.((((((....((((......))))......)))))).))))))))))))..))))))))...)))..***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116843

cortex		 SRR116844

epididymis		 SRR116839

testes		 SRR116845

epididymis
.........................................................CAAGTCACTAGTGGTTCCGTTT...................................................................................................... 22 0 1 242.00 242 158 46 24 11 0 3 0
.........................................................CAAGTCACTAGTGGTTCCGTTTA..................................................................................................... 23 0 1 110.00 110 75 18 9 6 0 2 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAG.................................................................................................... 24 0 1 99.00 99 66 12 11 10 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTA..................................................................................................... 22 0 1 28.00 28 17 3 6 2 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTT...................................................................................................... 21 0 1 18.00 18 11 0 5 1 0 1 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAT.................................................................................................... 24 1 1 17.00 17 12 0 1 4 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTT....................................................................................................... 21 0 1 10.00 10 4 4 2 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGATC................................................................................................. 27 3 1 10.00 10 0 0 0 0 10 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAG.................................................................................................... 23 0 1 7.00 7 4 1 1 1 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAGATC................................................................................................. 26 3 1 5.00 5 0 0 0 0 4 0 1
.........................................................CAAGTCACTAGTGGTTCCTTTTA..................................................................................................... 23 1 1 5.00 5 3 0 2 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAA.................................................................................................... 24 1 1 4.00 4 2 2 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGT................................................................................................... 25 0 1 4.00 4 2 0 2 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTT..................................................................................................... 23 1 1 4.00 4 2 2 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCTTTT...................................................................................................... 22 1 1 4.00 4 3 0 1 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGTATC................................................................................................ 28 2 1 3.00 3 0 0 0 0 2 0 1
.........................................................CAAGTCACTAGTGTTTCCGTTT...................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCTGTTT...................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAGTATC................................................................................................ 27 2 1 2.00 2 0 0 0 0 1 0 1
.......................................................................................................AAATGGTGCCCTAGTGACTACA........................................................ 22 0 1 2.00 2 1 0 1 0 0 0 0
.........................................................CAAGTCACTAGTGTTTCCGTTTAG.................................................................................................... 24 1 1 2.00 2 0 0 0 2 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGC................................................................................................... 25 1 1 2.00 2 1 1 0 0 0 0 0
.........................................................CCAGTCACTAGTGGTTCCGTTTAG.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCTGTTTA..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................TTACTAGTGGTTCCGTTTA..................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................CAAGTCACTCGTGGTTCCGTTTA..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAATC.................................................................................................. 26 2 1 1.00 1 0 0 0 0 1 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGA................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................TAGATGATTGTGCATTGTTT................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
........................................................TCAAGTCACTAGTGGTTCCGTTA...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGCTCCGTTT...................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................AAGTCACTAGTGGGTCCGTTT...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTCATC.................................................................................................. 26 3 1 1.00 1 0 0 0 0 1 0 0
.......................................................................................................AAATGGTGCCCTAGTGACTAC......................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTT..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGGTCCGTTT...................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................TAGATGATTGTGCATTGTTTCA.............................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTATTGGTTCCGTTT...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................AAGTCACTAGTGGTTCCTTTTA..................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTA...................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................CAAGTCCCTAGTGGTTCCTTTTAG.................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTG..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTATC................................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0
.........................................................CAAGTCACTAGTGGTCCCGTTTAG.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................AAATGGTGCCCTAGTGACTACAATC..................................................... 25 2 1 1.00 1 0 0 0 0 0 0 1
.......................................................................................................AAATGGTGCCCTAGTGACTAA......................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................AAATGGTGCCCTAGTGACTACT........................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTAA.................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
.........................................................CAAGTCACTAGTGGTTCCTTTTAT.................................................................................................... 24 2 2 1.00 2 2 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGATTCCGTTT...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTGGTTCCGTTTAGTTGGA............................................................................................... 29 3 1 1.00 1 0 1 0 0 0 0 0
..........................................................AAGTCACTAGTGGTTCCGTTTTG.................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................CACGTCACTAGTGGTTCCGTTTAGTATC................................................................................................ 28 3 1 1.00 1 0 0 0 0 1 0 0
.........................................................CAAGTCACTAGTGGTT............................................................................................................ 16 0 2 0.50 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTAGTTTTTCCGTTT...................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
.........................................................CAAGTCACTATTGGTTCCTTTT...................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0

Anti-sense strand reads

GTCTAACCACCCATGGGTAGTAGTTTTCACTGTCTCTTCTATTCCGGGTCCCCGAAAGTTCAGTGATCACCAAGGCAAATCATCTACTAACACGTAACAAAGTTTTACCACGGGATCACTGATGTTTCGGGGTCTCCGTCGTAGTAGTGGTTTCGCTACTGTCATCCATTCGTGGTCTGGA

*****************************************..(((..((((((((..(((((((((.(((.((((((....((((......))))......)))))).))))))))))))..))))))))...)))..****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:37 PM