ID:

mml-mir-219-1

 Coordinate:

chr4:33470435-33470544 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-51.0
mature

  1. chr15:10376576-10376596 +
  2. mml-mir-219-1  chr4:33470455-33470475 +
star

Sense Strand Reads

GCGTGGTGTCTCCATTCCTCCCGTTCCTCCCGTGCGCCTCCCTCCCTTCCCCGCCCCGGGCCGCGGCTCCTGATTGTCCAAACGCAATTCTCGAGTCTATGGCTCTGGCCGAGAGTTGAGTCTGGACGTCCCGAGCCGCCGCCCCCAAACCTCGAGGGGGAGAGCGGGTCGGAGGGTCTAGGGAGAACCAAAGTGGAGGGTGGAGGGAGT

*******************************************************..((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))....************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116845

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116839

testes
......................................................................TGATTGTCCAAACGCAATTCT....................................................................................................................... 21 0 2 336.00 672 662 5 3 0 1 0 1
......................................................................TGATTGTCCAAACGTAATTCT....................................................................................................................... 21 1 2 32.50 65 65 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTC........................................................................................................................ 20 0 2 22.50 45 45 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCG............................................................................. 22 0 1 13.00 13 4 6 2 0 1 0 0
......................................................................TGATTGTCCAAACGCAATTCTCG..................................................................................................................... 23 0 1 13.00 13 8 2 2 0 1 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCGA............................................................................ 23 0 1 8.00 8 1 5 0 0 2 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCGT............................................................................ 23 1 1 7.00 7 4 2 0 0 1 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCGATC.......................................................................... 25 1 1 6.00 6 0 0 0 4 0 2 0
......................................................................TGATTGTCCAAACGCAATTCTTGA.................................................................................................................... 24 1 2 4.50 9 9 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCA............................................................................... 20 1 1 4.00 4 0 1 3 0 0 0 0
......................................................................TGATTGTCCAAACGTAATTC........................................................................................................................ 20 1 2 3.50 7 7 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATT......................................................................................................................... 19 0 2 3.50 7 7 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTA...................................................................................................................... 22 1 2 3.50 7 7 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAAT.......................................................................................................................... 18 0 2 3.00 6 6 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTCGATC.................................................................................................................. 26 2 1 3.00 3 0 0 0 3 0 0 0
......................................................................TGATTGTCCAAACGCAATTA........................................................................................................................ 20 1 2 2.00 4 4 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCGAATC......................................................................... 26 2 1 2.00 2 0 0 0 2 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTTAA.................................................................................................................... 24 2 2 2.00 4 4 0 0 0 0 0 0
......................................................................TGATTGTCCAATCGCAATTCT....................................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................TGATTTTCCAAACGCAATTCT....................................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................TGATTGTCCAAACTCAATTCT....................................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................TGATTGTCCAACCGCAATTCT....................................................................................................................... 21 1 2 1.50 3 3 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATA......................................................................................................................... 19 1 3 1.33 4 4 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCAAA........................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCAAATC......................................................................... 26 3 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCT............................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCAT.............................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................TGATTGTCCAAACGTAATTCTC...................................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
......................................................................TGATTGTCCAAACGCAATTCTCT..................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAATGCAATTCT....................................................................................................................... 21 1 2 1.00 2 2 0 0 0 0 0 0
...............................................................................................................ATAGTTGAGTCTGGACGTCCCG............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCC.............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCAT............................................................................ 23 2 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................AGAGTTGAGTCTTGACGTCCCGATC.......................................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0
......................................................................TGATTGTCCAAACGCACTTCT....................................................................................................................... 21 1 2 1.00 2 2 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTATC.................................................................................................................... 24 3 2 1.00 2 0 0 0 0 0 2 0
......................................................................TGATTGTCCAAACGCAATTCTGGA.................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCCCT............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTAA..................................................................................................................... 23 2 3 1.00 3 3 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGGCC............................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACGTCC............................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTCGCGTT................................................................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................CGATTGTCCAAACGCAATTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTG...................................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................AGAGTTGAGTCTGGACG.................................................................................. 17 0 2 0.50 1 0 1 0 0 0 0 0
......................................................................CGATTGTCCGAACGCAATTCT....................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAGACGCAATTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGGAATTCTA...................................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAGCGCAATTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
..................................................................TAGCTGATTGTCCAAACGCAATTCT....................................................................................................................... 25 3 2 0.50 1 1 0 0 0 0 0 0
......................................................................CGATTGTCCAAACGCAATTCTTTA.................................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGAAATTCT....................................................................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 1
......................................................................TGATTGTCCAAACGCCATTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACTCAATTC........................................................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCAAAACGCAATTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACTTAATTCT....................................................................................................................... 21 2 4 0.50 2 2 0 0 0 0 0 0
......................................................................TGATTCTCCAAACGCAATTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTCGGA................................................................................................................... 25 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCG....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCTTTA.................................................................................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGGTTGTCCAAACGCACTTCT....................................................................................................................... 21 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................TAATTGTCCAAACGCAATTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAACTCT....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................GATTGTCCAAACGTAATTCT....................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAATCGCAATTCTA...................................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTCA....................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACTCAATT......................................................................................................................... 19 1 3 0.33 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCCATTC........................................................................................................................ 20 1 3 0.33 1 1 0 0 0 0 0 0
......................................................................CGATTGTCCAAACGTAATTCT....................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGTACTTCT....................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGTAATTCA....................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCAATTAA....................................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
............................................................................................................................................................GGCGAGAGCGGGTCG....................................... 15 1 20 0.20 4 0 0 0 2 0 2 0
...............................................................................................................AGAGTTGAGTCTGGACGTAA............................................................................... 20 2 8 0.13 1 0 0 0 0 1 0 0
......................................................................TGATTGTCCAAACGCATC.......................................................................................................................... 18 2 20 0.10 2 0 0 0 0 0 2 0
.......................................CTCTCCGTTCCCCGCCCCGGGTC.................................................................................................................................................... 23 3 12 0.08 1 0 1 0 0 0 0 0
......................................................................TGATTGTCCAAACTTAATTC........................................................................................................................ 20 2 13 0.08 1 1 0 0 0 0 0 0
......................................................................TGATTGTCCAAACGCGAA.......................................................................................................................... 18 2 19 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CGCACCACAGAGGTAAGGAGGGCAAGGAGGGCACGCGGAGGGAGGGAAGGGGCGGGGCCCGGCGCCGAGGACTAACAGGTTTGCGTTAAGAGCTCAGATACCGAGACCGGCTCTCAACTCAGACCTGCAGGGCTCGGCGGCGGGGGTTTGGAGCTCCCCCTCTCGCCCAGCCTCCCAGATCCCTCTTGGTTTCACCTCCCACCTCCCTCA

**************************************************************..((((.(((((((..(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))..))))))).))))....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116843

cortex		 SRR116841

prostate		 SRR116845

epididymis
......................................................................ACTAACAGGTTTGCGTTAAGA....................................................................................................................... 21 0 2 4.50 9 4 3 1 1 0
..........................................................................ACAGGTTTGCGTTAAGAGCT.................................................................................................................... 20 0 1 3.00 3 2 1 0 0 0
......................................................................TCTAACAGGTTTGCGTTAAGA....................................................................................................................... 21 1 2 1.00 2 0 1 1 0 0
.....................................................................GACTAACAGGTTTGCGTTAAGA....................................................................................................................... 22 0 2 1.00 2 1 0 0 1 0
.....................................................................TACTAACAGGTTTGCGTTAAGA....................................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
.......................................................................CTAACAGGTTTGCGTTAAGA....................................................................................................................... 20 0 2 0.50 1 0 0 1 0 0
............................................................................................................................CTGCAGGTCTCAGCGGCGGC.................................................................. 20 3 10 0.10 1 0 0 0 0 1
.............................................................................................................................TGCAGGTCTCAGCGGCGGCG................................................................. 20 3 16 0.06 1 0 0 0 1 0

Generated: 09/01/2015 at 12:23 PM