ID:

mml-mir-217b

 Coordinate:

chr13:56119861-56119972 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.0 -31.0 -31.0

Sense Strand Reads

AGAATAAAGTTGCTGCATTTGGAAACAAATGATACTTAATATAATTATTACATAGTTTTTGATGTCGCAGATACTGCATCAGGAACTGATTGGATAAGAATCAGTCACCATCAGTTCCTAATGCATTGCCTTCAGCATCTAAACAAGCACCAGTAAATACCTCAAGTTAGATTTGCTGTGATGTGTTCATGGTCATCCAATAAAATACTCAG

***********************************.(((((....)))))....((((..(((((...((.((.(((((.((((((((((..(((........)))...)))))))))).))))).)).))...))))).)))).......(((((((............)))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116839

testes		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116841

prostate
......................................................................ATACTGCATCAGGAACTGATTG........................................................................................................................ 22 0 1 44.00 44 41 2 0 1 0
......................................................................ATACTGCATCAGGAACTGATT......................................................................................................................... 21 0 1 15.00 15 13 1 0 1 0
.......................................................................TACTGCATCAGGAACTGATTGGA...................................................................................................................... 23 0 1 14.00 14 9 3 0 1 1
.......................................................................TACTGCATCAGGAACTGATTGG....................................................................................................................... 22 0 1 4.00 4 3 0 0 1 0
......................................................................ATACTGCATCAGGAACTGATTGA....................................................................................................................... 23 1 1 3.00 3 2 0 0 0 1
.......................................................................TACTGCATCAGGAACTGATTGGAATC................................................................................................................... 26 3 1 3.00 3 0 0 3 0 0
......................................................................ATACTGCATCAGGAACTGATTT........................................................................................................................ 22 1 1 2.00 2 2 0 0 0 0
......................................................................ATACTGCATCAGGAACTGATTGG....................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
......................................................................ATACTGCATCAGGAACTGATA......................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................TATTGCATCAGGAACTGATTGGATC.................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0
.......................................................................TACTGCATCAGGAACTGATTGGATC.................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0
.......................................................................TACTGCCTCAGGAACTGATTGGATC.................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0
......................................................................ATACTGCATCAGGAACTGATTGAA...................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0
......................................................................ATACTGCATCAGGAACTGA........................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
......................................................................ATACTGCATCACGAACTGATT......................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.......................................................................TACTACATCAGGAACTGATTGGA...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.......................................................................TACTGCATCAGGAACTGATTGTA...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................ATACTGCATCAGGAACTGAT.......................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
.......................................................................TACTGCATCAGGAACTGATTGGAAA.................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0
......................................................................ATACTGCATCAGGAACTGATTA........................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
......................................................................ATCCTGCATCAGGAACTGATTG........................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
......................................................................ATACTGCATCAGGAACTGT........................................................................................................................... 19 1 3 0.33 1 0 0 0 1 0

Anti-sense strand reads

TCTTATTTCAACGACGTAAACCTTTGTTTACTATGAATTATATTAATAATGTATCAAAAACTACAGCGTCTATGACGTAGTCCTTGACTAACCTATTCTTAGTCAGTGGTAGTCAAGGATTACGTAACGGAAGTCGTAGATTTGTTCGTGGTCATTTATGGAGTTCAATCTAAACGACACTACACAAGTACCAGTAGGTTATTTTATGAGTC

***********************************.(((((....)))))....((((..(((((...((.((.(((((.((((((((((..(((........)))...)))))))))).))))).)).))...))))).)))).......(((((((............)))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:09 PM