ID:

mml-mir-20b

 Coordinate:

chrX:133484757-133484825 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.8

Sense Strand Reads

GGGACTGTGCAGTGTACAGTTGTGTACAGAGGATAAGATTGGGTCCTAGTAGTACCAAAGTGCTCATAGTGCAGGTAGTTTTGGCATGACTCTACTGTAGTGTGGGCACTTCCAGTACTCTTGGATAACAAATCTCTTGTTGATGGAGAGAATATTCAAAGACATTGCT

****************************************..((((.((.(((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))))).))))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116839

testes
.......................................................CAAAGTGCTCATAGTGCAGGTAGATC........................................................................................ 26 2 1 1050.00 1050 954 0 96 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGAATC....................................................................................... 27 3 1 164.00 164 149 0 15 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAG........................................................................................... 23 0 1 162.00 162 0 83 0 57 10 11 1
.......................................................CAAAGTGCTCATAGTGCAGGTAGTATC....................................................................................... 27 2 1 34.00 34 32 0 2 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGA.......................................................................................... 24 1 1 24.00 24 2 6 0 12 4 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGT.......................................................................................... 24 0 1 21.00 21 0 16 0 2 2 1 0
.......................................................CAAAGTGCTCATAGTGCAGGTAT........................................................................................... 23 1 1 10.00 10 0 8 0 1 1 0 0
.......................................................CACAGTGCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 10.00 10 10 0 0 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCCA....................................................... 21 0 1 8.00 8 0 2 0 5 0 1 0
.......................................................CAAAGTGCTCATAGTGCAGGTA............................................................................................ 22 0 1 8.00 8 0 1 0 4 2 1 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGAT......................................................................................... 25 1 1 6.00 6 3 0 1 1 0 1 0
.............................................................................................ACTGTAGTGTGGGCACTTCCAGT..................................................... 23 0 1 6.00 6 0 4 0 2 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGATATC...................................................................................... 28 3 1 6.00 6 6 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGATT........................................................................................ 26 1 1 6.00 6 6 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGCTC........................................................................................ 26 2 1 5.00 5 5 0 0 0 0 0 0
.......................................................CAAAGTTCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 5.00 5 5 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGTTAGATC........................................................................................ 26 3 1 4.00 4 4 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAA........................................................................................... 23 1 1 4.00 4 0 3 0 1 0 0 0
.......................................................CAAAGTGCTCATAGTGCCGGTAGATC........................................................................................ 26 3 1 4.00 4 4 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTTCAGGTAGATC........................................................................................ 26 3 1 4.00 4 3 0 1 0 0 0 0
.......................................................CAAAGTGCTCATAGGGCAGGTAGATC........................................................................................ 26 3 1 3.00 3 2 0 1 0 0 0 0
.......................................................CAAAGTGCTCATAGTCCAGGTAGATC........................................................................................ 26 3 1 3.00 3 3 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGTT......................................................................................... 25 0 1 3.00 3 0 3 0 0 0 0 0
........................................................AAAGTGCTCATAGTGCAGGTAGAATC....................................................................................... 26 3 1 3.00 3 1 0 2 0 0 0 0
.......................................................CAAAGTCCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 3.00 3 3 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGGAGATC........................................................................................ 26 3 1 3.00 3 3 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCACGTAGATC........................................................................................ 26 3 1 3.00 3 3 0 0 0 0 0 0
........................................................AAAGTGCTTATAGTGCAGGTAGATC........................................................................................ 25 3 3 2.33 7 5 0 2 0 0 0 0
.......................................................CAACGTGCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 2.00 2 1 0 1 0 0 0 0
.......................................................AAAAGTGCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 2.00 2 2 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGT............................................................................................. 21 0 1 2.00 2 0 0 0 0 2 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGAATT....................................................................................... 27 2 1 2.00 2 2 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTCGATC........................................................................................ 26 3 1 2.00 2 1 0 1 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCCAGTCTC.................................................. 26 3 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCC........................................................ 20 0 1 2.00 2 0 0 0 2 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCCAGTT.................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGAA......................................................................................... 25 2 1 2.00 2 0 1 0 1 0 0 0
........................................................AAAGTGCTCATAGTGCAGGTAGATC........................................................................................ 25 2 1 2.00 2 2 0 0 0 0 0 0
.......................................................CAAAGTGTTCATAGTGCAGGTAGTATC....................................................................................... 27 3 1 2.00 2 2 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGTTC........................................................................................ 26 1 1 2.00 2 1 0 1 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGGATC....................................................................................... 27 3 1 2.00 2 2 0 0 0 0 0 0
.......................................................TAAAGTGCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 2.00 2 1 0 1 0 0 0 0
.......................................................CAAAGTGCTCATAGTGTAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGCAGTATC....................................................................................... 27 3 1 1.00 1 0 0 1 0 0 0 0
.......................................................CACAGTGCTCATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGTTTA....................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGTAGGTAGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGTTAA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGTTAGT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGATA........................................................................................ 26 2 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCCAGA..................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTT............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................CAAAGTGCTCATAGCGCAGGTAGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCTGGTAGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGAAAT....................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGAG......................................................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGTTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTATT.......................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCCAA...................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGG.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGTTAA....................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 1
.............................................................................................ACTGTAATGTGGGCACTTCCA....................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAGGTGCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGACAT....................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTATATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TCTACTGTAGTGTGGGCACTTCC........................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTTCTCATAGTGCAGGTAGTATC....................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTGGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CGAAGTGCTCATAGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................CAAAGTGCTCATCGTGCAGGTAGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGCGCTCATAGTGCAGGTAGATC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCCATT..................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................CAAAGTGCTCATAGTGCATGTAGTATC....................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................CAAAGTGCTCATATTGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................CAAAGTGCTCATAGTGCAGGTAGACTC....................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTACAG...................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0
............................................................................................TACTGTAGTGTGGGCACTTT......................................................... 20 1 2 0.50 1 0 0 0 0 1 0 0
.............................................................................................ACTGTAGTGTGGGCACTTCCTA...................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTA......................................................... 19 1 4 0.50 2 0 0 0 2 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTC......................................................... 19 0 2 0.50 1 0 0 0 1 0 0 0
........................................................AAAGTGCTTATAGTGCAGGTAGAT......................................................................................... 24 2 3 0.33 1 0 0 0 1 0 0 0
.......................................................CAAAGTGCTCATATTGCAGGTAA........................................................................................... 23 2 5 0.20 1 0 0 0 0 1 0 0
.........................................................AAGTGCTTATAGTGCAGGTAGATA........................................................................................ 24 3 6 0.17 1 0 0 0 0 0 0 1
............................................................................................TACTGTAGTGTGGGCACTTTTAA...................................................... 23 3 10 0.10 1 0 0 0 1 0 0 0
.............................................................................................ACTGTAGTGTGGGCACTTAA........................................................ 20 2 10 0.10 1 0 0 0 1 0 0 0

Anti-sense strand reads

CCCTGACACGTCACATGTCAACACATGTCTCCTATTCTAACCCAGGATCATCATGGTTTCACGAGTATCACGTCCATCAAAACCGTACTGAGATGACATCACACCCGTGAAGGTCATGAGAACCTATTGTTTAGAGAACAACTACCTCTCTTATAAGTTTCTGTAACGA

****************************************..((((.((.(((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))))).))))...**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:35 PM