ID:

mml-mir-20a

 Coordinate:

chr17:71887853-71887923 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.9 -38.9 -38.9

Sense Strand Reads

TTATTGTGTCGATGTAGAATCTGCCTGGTGTATCTGATGTGACAGCTTCTGTAGCACTAAAGTGCTTATAGTGCAGGTAGTGTTTAGTTATCTACTGCATTATGAGCACTTAAAGTACTGCTAGCTGTAGAACTCCAGCTTCGGCCTGTCGCCCAATCAAACTGTCCTGTT

******************************************(((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116843

cortex		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116839

testes
.........................................................TAAAGTGCTTATAGTGCAGGTAGATC........................................................................................ 26 3 1 2071.00 2071 1523 548 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAATC....................................................................................... 27 3 1 171.00 171 128 43 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAG........................................................................................... 23 0 1 162.00 162 0 0 48 37 39 25 13
.........................................................TAAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 1 1 102.00 102 7 2 35 17 20 9 12
.........................................................TAAAGTGCTTATAGTGCAGGTA............................................................................................ 22 0 1 50.00 50 0 0 13 16 15 5 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGTATC....................................................................................... 27 2 1 37.00 37 30 7 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAT........................................................................................... 23 1 1 29.00 29 0 0 6 7 7 7 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGAA......................................................................................... 25 2 1 22.00 22 2 0 5 6 3 4 2
.........................................................TAAAGTGCTTATAGTGCAGGTAGT.......................................................................................... 24 0 1 21.00 21 0 0 2 9 1 5 4
.........................................................TAAAGTGCTTATAGTGCAGGT............................................................................................. 21 0 1 14.00 14 0 0 3 5 4 0 2
.............................................................................................ACTGCATTATGAGCACTTAAAGT....................................................... 23 0 1 10.00 10 0 0 5 2 2 1 0
.........................................................TAAAGTGCTTATAGTGCAGGTAA........................................................................................... 23 1 2 8.00 16 0 0 2 9 3 1 1
.........................................................TAAAGTGCTTATAGTGCAGTTAG........................................................................................... 23 1 1 6.00 6 0 0 3 3 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGGATC....................................................................................... 27 3 1 5.00 5 5 0 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGATC........................................................................................... 23 3 4 5.00 20 9 11 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGG.............................................................................................. 20 0 1 5.00 5 0 1 1 2 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAATC......................................................................................... 25 2 1 5.00 5 4 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAA........................................................................................ 26 3 1 5.00 5 0 0 0 2 0 2 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAT........................................................................................ 26 2 1 5.00 5 1 0 0 2 1 0 1
.........................................................TAAAGTGCTTATAGTGCAG............................................................................................... 19 0 1 4.00 4 0 0 2 1 1 0 0
.............................................................................................ACTGCATTATGAGCACTTA........................................................... 19 0 1 4.00 4 0 0 1 2 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTTC........................................................................................ 26 2 1 4.00 4 4 0 0 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAA.......................................................... 20 0 1 4.00 4 0 0 1 3 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAGTATC.................................................... 26 2 1 4.00 4 3 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGACC........................................................................................ 26 3 1 4.00 4 2 2 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGCTC........................................................................................ 26 3 2 3.50 7 4 3 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGATT........................................................................................ 26 2 1 3.00 3 2 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAC......................................................................................... 25 2 1 3.00 3 3 0 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTAA........................................................................................ 26 2 1 3.00 3 0 0 0 1 0 1 1
.........................................................TAAAGTGCTTATAGTGCAGGA............................................................................................. 21 1 1 3.00 3 0 0 3 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTATC.......................................................................................... 24 2 1 3.00 3 1 2 0 0 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAGATC........................................................................................ 25 3 3 2.33 7 5 2 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTT............................................................................................ 22 1 1 2.00 2 0 0 0 0 1 0 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGACTC....................................................................................... 27 3 1 2.00 2 2 0 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAT......................................................................................... 25 2 1 2.00 2 1 0 1 0 0 0 0
..........................................................AAAGTGCTTACAGTGCAGGTAGTATC....................................................................................... 26 3 3 2.00 6 6 0 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGATA........................................................................................ 26 3 1 2.00 2 1 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGAGT.......................................................................................... 24 1 1 2.00 2 0 0 0 1 1 0 0
.........................................................TAAAGTGCTTCTAGTGCAGGTAT........................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1
.........................................................TAAAGTGCTTATAGTGCAGGTAATA......................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0
.........................................................TGAAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGCAG........................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
..............................................................................................CTGCATTATGAGCACTTAAAGT....................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGC................................................................................................. 17 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGTTA............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
.........................................................TAAAGTGCTTATATTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCATGTAT........................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGTA......................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 1
.........................................................TAAAGTGCTTATAGTGCAGGTAGGTC........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAG........................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGA............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................TAAAGTTCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0
.........................................................TAAAGTGCTTATAGTGCAGTTAGT.......................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0
...........................................................AAGTGCTTATAGTGCAGGT............................................................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................TAAAGTGCTTATATTGCAGGTA............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
.............................................................GTGCTTATAGTGCAGGTAGA.......................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................CTGCATTATGAGCACTTAAAGTATC.................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................TAAAGCGCTTATAGTGCAGGTA............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
.........................................................TACAGTGCTTATAGTGCAGGTAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAGAA......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGACGA.......................................................................................... 24 3 1 1.00 1 0 0 0 0 1 0 0
.........................................................TAAAGTGCTTATAGTGCAGGGAG........................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
.........................................................TAAAGGGCTTATAGTGCAGGT............................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0
.........................................................TAAAGTGCTTATAGTGCATGT............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGATG........................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0 0
.........................................................TAAAGTGCTTATCGTGCAGGTAG........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGCAGA.......................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................ACTGTATTATGAGCACTTAAAGTATC.................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................ACTGCATTATGAGCACTTAAAGTT...................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0
.........................................................TAAAGTCCTTATAGTGCAGGTAGTATC....................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
.........................................................TAAAGTGCTTATACTGCAGGTAGTATC....................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAGAAAT....................................................................................... 27 3 1 1.00 1 0 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGATC............................................................................................ 22 2 2 0.50 1 0 1 0 0 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTAAA.......................................................................................... 24 2 2 0.50 1 0 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGA.............................................................................................. 20 1 2 0.50 1 0 0 0 1 0 0 0
.........................................................TAAAGTGCTTATAGTGCAGGTCA........................................................................................... 23 2 2 0.50 1 0 0 0 1 0 0 0
..........................................................AAAGTGCTTATAGTGCAGGTAGAT......................................................................................... 24 2 3 0.33 1 0 0 0 1 0 0 0
..........................................................AAAGTGCTTACAGTGCAGGTAGTAT........................................................................................ 25 2 3 0.33 1 0 0 0 0 0 1 0
.........................................................TAAAGTGCTTATAGTTCAGTTA............................................................................................ 22 2 4 0.25 1 0 0 0 0 0 0 1
.........................................................TAAAGTGCTTACAGTGCAGGTAA........................................................................................... 23 2 4 0.25 1 0 0 1 0 0 0 0
...........................................................AAGTGCTTATAGTGCAGGTAGATA........................................................................................ 24 3 6 0.17 1 0 0 0 0 0 0 1
.........................................................TAAAGTGCTTATAGTGCAGAA............................................................................................. 21 2 8 0.13 1 0 0 0 1 0 0 0
......GGTCGATGTAGAATC...................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

AATAACACAGCTACATCTTAGACGGACCACATAGACTACACTGTCGAAGACATCGTGATTTCACGAATATCACGTCCATCACAAATCAATAGATGACGTAATACTCGTGAATTTCATGACGATCGACATCTTGAGGTCGAAGCCGGACAGCGGGTTAGTTTGACAGGACAA

****************************************(((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).)))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:14 PM