ID:

mml-mir-204

 Coordinate:

chr15:80469726-80469835 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.4

Sense Strand Reads

AGGAGTGTGGGGATGGAGGCAAGCAGAGGACCTCCTGATCGTGTACCCATGGCTACAGTCTTTCTTCATGTGACTCGTGGACTTCCCTTTGTCATCCTATGCCTGAGAATATATGAAGGAGGCTGGGAAGGCAAAGGGACGTTCAATTGTCATCACTGGCATCTTTTTTGATCATTGCACCATCATCAAATGCATTGGGATAACCATGAC

*******************************************************************..(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis		 SRR116845

epididymis		 SRR116840

epididymis		 SRR116839

testes		 SRR116841

prostate		 SRR116842

seminal vesicle
..................................................................................TTCCCTTTGTCATCCTATGCCT.......................................................................................................... 22 0 1 125.00 125 80 0 0 18 7 10 10
..................................................................................TTCCCTTTGTCATCCTATGCCTATC....................................................................................................... 25 3 2 97.50 195 0 142 53 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGT.................................................................... 21 0 1 92.00 92 46 0 0 13 19 9 5
..................................................................................TTCCCTTTGTCATCCTATGCCTGATC...................................................................................................... 26 2 1 70.00 70 0 37 33 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGCATC......................................................................................................... 23 2 1 24.00 24 0 17 7 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATTCCT.......................................................................................................... 22 1 2 15.50 31 15 0 0 8 0 7 1
..................................................................................TTCCCTTTGTCATCCTATGCCTTATC...................................................................................................... 26 3 1 10.00 10 0 7 3 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTA................................................................... 22 1 1 9.00 9 3 0 0 0 5 1 0
..................................................................................TTCCCTTTGTCATCCTATGCCTG......................................................................................................... 23 0 1 9.00 9 7 0 0 1 0 0 1
.........................................................................................................................GCTGGGAAGGCAAAGGGACG..................................................................... 20 0 1 8.00 8 4 0 0 3 1 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCTGT........................................................................................................ 24 1 1 8.00 8 3 0 0 2 2 0 1
..................................................................................TTCCCTTTGTCATCCTATGCCTT......................................................................................................... 23 1 1 6.00 6 1 0 0 0 3 1 1
..................................................................................TTCCCTTTGTCATCCTATGCCTAATC...................................................................................................... 26 3 1 6.00 6 0 5 1 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTT................................................................... 22 0 1 5.00 5 3 0 0 2 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTAA.................................................................. 23 2 1 5.00 5 2 0 0 0 1 1 1
..................................................................................TTCCCTTTGTCATCCTATTCCTGT........................................................................................................ 24 2 1 4.00 4 2 0 0 1 1 0 0
..................................................................................TTCCCTTTGTCATCCTATGCC........................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCATC........................................................................................................ 24 3 8 3.13 25 0 20 5 0 0 0 0
...............................................................CTTCATGTGACTCGTGGAC................................................................................................................................ 19 0 1 3.00 3 1 0 0 1 1 0 0
..................................................................................TTCCCTTTGTCATCCTATTCCTGATC...................................................................................................... 26 3 1 3.00 3 0 3 0 0 0 0 0
......................................................................................................................GAGGCTGGGAAGGCAAAGGGACGT.................................................................... 24 0 1 3.00 3 2 0 0 1 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCTGTATA..................................................................................................... 27 3 1 2.00 2 0 2 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGC............................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTTT.................................................................. 23 1 1 2.00 2 1 0 0 1 0 0 0
..............................................................TCTTCATGTGACTCGTGGAC................................................................................................................................ 20 0 1 2.00 2 0 0 0 1 0 1 0
........................................................................................................................GGCTGGGAAGGCAAAGGGACGTAA.................................................................. 24 2 1 2.00 2 1 0 0 1 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTAG.................................................................. 23 2 1 2.00 2 1 0 0 0 1 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTATC................................................................. 24 3 3 1.33 4 0 2 2 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTTTC................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................GAGGCTGGGAAGGCAAAGGGACG..................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGCGAAGGGACGT.................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GTTGGGAAGGCAAAGGGACGT.................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCTTT........................................................................................................ 24 2 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................................GAGGCTGGGAAGGCAAAGGGACGTTT.................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCTCTC....................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................................ATTCCCTTTGTCATCCTATGCCT.......................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0
..................................................................................TTCCCTTTGTCGTCCTATGCCT.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCTGAATC..................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACA..................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0
......................................................................................................................GAGGCTGGGAAGGCAAAGGGAC...................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGC.................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................................GAGGCTGGGAAGGCAAAGGGACGTT................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GCTGGGCAGGCAAAGGGACG..................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................CTTCCCTTTGTCATCCTATGCATC......................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................TCTGGGAAGGCAAAGGGACGT.................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1
..................................................................................TTCCCTTTGTCATACTATGCCT.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................GGCTGGGAAGGCAAAGGGACGT.................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCTGTG....................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATTCCTG......................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0
.................................................................................CTTCCCTTTGTCATCCTATGCCTGATC...................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATACCT.......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTTTA................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0
................................................................TTCATGTGACTCGTGGAC................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................AGGCTGGGAAGGCAAAGGGACGTT................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGCCGATC.................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
................................................................................AATTCCCTTTGTCATCCTATGCCT.......................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTACGCCT.......................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACTT.................................................................... 21 1 2 0.50 1 0 0 0 0 0 0 1
..................................................................................TTCCCTTTTTCATCCTATGCCTGATC...................................................................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACGTAT.................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0
.................................................................................CTTCCCTTTGTCATCCTATGCCTATC....................................................................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................................................GCGGGAAGGCAAAGGGACGTT................................................................... 21 2 2 0.50 1 0 0 0 0 1 0 0
..................................................................................TTCCCTTTGTCATCCTATGCCTATT....................................................................................................... 25 3 2 0.50 1 0 1 0 0 0 0 0
................................................................................CTTTCCCTTTGTCATCCTATGC............................................................................................................ 22 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGCAAAGGGACTAT................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0
..........................AGGTCCTCCTGATCG......................................................................................................................................................................... 15 1 20 0.15 3 0 0 0 1 0 0 2
..................................................................................TTCCCTTTGTCATCCTATGAATC......................................................................................................... 23 3 9 0.11 1 0 1 0 0 0 0 0
.........................................................................................................................GCTGGGAAGGAAAAGGGACGTAA.................................................................. 23 3 10 0.10 1 0 0 0 0 0 1 0
.........................................................................................................................GCTGGGAAGGCAAAGGGAA...................................................................... 19 1 20 0.05 1 1 0 0 0 0 0 0
..................................................................................TTCCCTTTGTCATCCTATTCAA.......................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

TCCTCACACCCCTACCTCCGTTCGTCTCCTGGAGGACTAGCACATGGGTACCGATGTCAGAAAGAAGTACACTGAGCACCTGAAGGGAAACAGTAGGATACGGACTCTTATATACTTCCTCCGACCCTTCCGTTTCCCTGCAAGTTAACAGTAGTGACCGTAGAAAAAACTAGTAACGTGGTAGTAGTTTACGTAACCCTATTGGTACTG

*****************************************************..(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))))....******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:11 PM