ID:

mml-mir-19b-2

 Coordinate:

chrX:133484619-133484714 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.4 -41.2 -41.1
mature

  1. mml-mir-19b-1  chr17:71888033-71888055 +
  2. mml-mir-19b-2  chrX:133484631-133484653 -
star

Sense Strand Reads

CCAGTACTCTTGGATAACAAATCTCTTGTTGATGGAGAGAATATTCAAAGACATTGCTACTTACAATTAGTTTTGCAGGTTTGCATTTCAGCGTATATATGTATATGTGGCTGTGCAAATCCATGCAAAACTGATTGTGATAATGTGTGCTTCCTACATCTGTGTGAACACACCTTCACGCGCATCTCCGGCACTC

***********************************(((............((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))............)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116843

cortex		 SRR116839

testes
...............................................................................................................TGTGCAAATCCATGCAAAACTGAATC........................................................... 26 2 2 120.00 240 165 75 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGATC............................................................ 25 1 1 101.00 101 58 43 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGA.............................................................. 23 0 2 26.50 53 0 0 23 12 10 5 3
...............................................................................................................TGTGCAAATCCATGCAAAACTGT.............................................................. 23 1 2 23.00 46 0 0 24 10 10 1 1
...............................................................................................................TGTGCAAATCCATGCAAAACTG............................................................... 22 0 2 22.50 45 0 0 13 17 8 6 1
...............................................................................................................TGTGCAAATCCATTCAAAACTGATC............................................................ 25 2 1 20.00 20 18 2 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACT................................................................ 21 0 2 17.00 34 0 0 7 7 10 10 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGTATC........................................................... 26 3 2 15.50 31 18 13 0 0 0 0 0
...............................................................................................................TGTGCAAATCTATGCAAAACTGAATC........................................................... 26 3 3 15.00 45 16 29 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATCCAAAACTGATC............................................................ 25 2 1 13.00 13 9 4 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATTCAAAACTGAATC........................................................... 26 3 2 5.00 10 8 2 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGTAAAACTGAATC........................................................... 26 3 2 3.50 7 6 1 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGCATC........................................................... 26 3 2 3.50 7 5 2 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGTAAAACTGATC............................................................ 25 2 2 3.00 6 5 1 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAACCTGAATC........................................................... 26 3 2 2.00 4 2 2 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGAAC............................................................ 25 2 2 2.00 4 0 4 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTA............................................................... 22 1 2 1.50 3 0 0 1 0 2 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGTA............................................................. 24 2 2 1.50 3 0 0 1 1 1 0 0
...............................................................................................................TGTGCAAATCCATGCACAACTGAATC........................................................... 26 3 2 1.50 3 3 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAA.................................................................... 17 0 2 1.00 2 0 0 0 0 2 0 0
...............................................................................................................TGTGCAAATCCATGAAAAACTGATC............................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................GTGACTGTGCAAATCCATGCAAAACTG............................................................... 27 1 1 1.00 1 0 0 0 0 0 1 0
...............................................................................................................TGTGCAAATCCATTCAAACCTGATC............................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAACCTGATC............................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................GTGCAAATCCATGCAAAACTGA.............................................................. 22 0 2 1.00 2 0 0 1 0 1 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGCTC............................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................TGTGCAAGTCCATGCAAAACTGATC............................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAAC................................................................. 20 0 2 1.00 2 0 0 1 0 1 0 0
...............................................................................................................TGTGCAAATCCATGCTAAACTGATC............................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................TGTGCATATCCATGCAAAACTGATC............................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCACATCCATGCAAAACTGATC............................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAACCTGTTC............................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCCAAACTGATC............................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................GTGCAAATCCATGCAAAACTGAT............................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTT............................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAATCTGA.............................................................. 23 1 2 0.50 1 0 0 0 1 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAACCT................................................................ 21 1 2 0.50 1 0 0 0 0 0 1 0
...............................................................................................................CGTGCAAATCCATGCAAAACTGAATC........................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGAA............................................................. 24 1 2 0.50 1 0 0 0 0 1 0 0
...............................................................................................................TGCGCAAATCCATGCAAAACTGAATC........................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGAAA............................................................ 25 2 2 0.50 1 0 0 0 1 0 0 0
...............................................................................................................TGTGCAAATCCATGCAACACTGAATC........................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATCCAAACCTGATC............................................................ 25 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATTCATGCAAAACTGATC............................................................ 25 2 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCA..................................................................... 16 0 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGGATC........................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
...............................................................................................................TGTGCAAATCAATGCAAAACTGAATC........................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAGAACTGAATC........................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAACACTGA.............................................................. 23 1 2 0.50 1 0 0 0 0 0 0 1
...............................................................................................................TGTGCAAATCCATTCAAAACTGT.............................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAACCTGT.............................................................. 23 2 2 0.50 1 0 0 0 0 0 1 0
...............................................................................................................TGTGCAAATCCATGCAACACTGT.............................................................. 23 2 2 0.50 1 0 0 0 1 0 0 0
.................................................................................................................TCCAAATCCATGCAAAACTGAATC........................................................... 24 3 4 0.50 2 2 0 0 0 0 0 0
...............................................................................................................TGTGTAAATCCATGCAAAACTGT.............................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................TGCGCAAATCCATGCAAAACTG............................................................... 22 1 2 0.50 1 0 0 0 0 0 1 0
...................................................................................................................CAAATCCATGCAAAACTGAATC........................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTGTAT............................................................ 25 2 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................TGTGCAAATCCATCCAAAACTGAATC........................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................CGTGCAAATCCATGCAAAACTGT.............................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTTA.............................................................. 23 1 2 0.50 1 0 0 0 0 1 0 0
...............................................................................................................TGTGCAAATCCCTGCAAAACTGA.............................................................. 23 1 2 0.50 1 0 0 1 0 0 0 0
...............................................................................................................TGTGCAAATCCTTGCAAAACTGAATC........................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCACAACTGT.............................................................. 23 2 3 0.33 1 0 0 0 0 1 0 0
...............................................................................................................TGTTCAAATCCATGCAAAACTGAATC........................................................... 26 3 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCACATCCATGCAAAACTGAATC........................................................... 26 3 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAACTTT.............................................................. 23 2 3 0.33 1 0 0 1 0 0 0 0
...............................................................................................................TGTGCAAATCCATGTAAAACT................................................................ 21 1 4 0.25 1 0 0 1 0 0 0 0
...............................................................................................................TTTGCAAATCCATTCAAAACTGATC............................................................ 25 3 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGTAACACTGATC............................................................ 25 3 4 0.25 1 1 0 0 0 0 0 0
...............................................................................................................TGTGCAAATCCATGCAAAAATC............................................................... 22 2 6 0.17 1 0 1 0 0 0 0 0

Anti-sense strand reads

GGTCATGAGAACCTATTGTTTAGAGAACAACTACCTCTCTTATAAGTTTCTGTAACGATGAATGTTAATCAAAACGTCCAAACGTAAAGTCGCATATATACATATACACCGACACGTTTAGGTACGTTTTGACTAACACTATTACACACGAAGGATGTAGACACACTTGTGTGGAAGTGCGCGTAGAGGCCGTGAG

***********************************(((............((((((....((((((((((((((((((((((((((....(((((((....)))))))....))))))).)).)))))))))))))))))))))))............)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:36 PM