ID:

mml-mir-19b-1

 Coordinate:

chr17:71887980-71888066 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.2 -41.0 -40.9
mature

  1. mml-mir-19b-1  chr17:71888033-71888055 +
  2. mml-mir-19b-2  chrX:133484631-133484653 -
star

Sense Strand Reads

TAGAACTCCAGCTTCGGCCTGTCGCCCAATCAAACTGTCCTGTTACTGAACACTGTTCTATGGTTAGTTTTGCAGGTTTGCATCCAGCTGTGTGATATTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGTAGTGAAAAGTCTGTAGAAAAGTAAGGGAAACTCAAACCCCTTTCTACACAGGTT

***********************************.........(((...(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))...))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116843

cortex		 SRR116839

testes
.......................................................................................................TGTGCAAATCCATGCAAAACTGAATC.......................................................... 26 2 2 120.00 240 165 75 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGA............................................................. 23 0 2 26.50 53 0 0 23 12 10 5 3
.......................................................................................................TGTGCAAATCCATGCAAAACTGT............................................................. 23 1 2 23.00 46 0 0 24 10 10 1 1
.......................................................................................................TGTGCAAATCCATGCAAAACTG.............................................................. 22 0 2 22.50 45 0 0 13 17 8 6 1
.......................................................................................................TGTGCAAATCCATGCAAAACT............................................................... 21 0 2 17.00 34 0 0 7 7 10 10 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGTATC.......................................................... 26 3 2 15.50 31 18 13 0 0 0 0 0
.......................................................................................................TGTGCAAATCTATGCAAAACTGAATC.......................................................... 26 3 3 15.00 45 16 29 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTATC............................................................ 24 2 1 8.00 8 6 2 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATTCAAAACTGAATC.......................................................... 26 3 2 5.00 10 8 2 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGCATC.......................................................... 26 3 2 3.50 7 5 2 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGTAAAACTGAATC.......................................................... 26 3 2 3.50 7 6 1 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGAAC........................................................... 25 2 2 2.00 4 0 4 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGACTC.......................................................... 26 1 1 2.00 2 1 1 0 0 0 0 0
.................................................................AGTTTTGCAGGTTTGCATCCAGCATC................................................................................................ 26 3 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAACCTGAATC.......................................................... 26 3 2 2.00 4 2 2 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGTA............................................................ 24 2 2 1.50 3 0 0 1 1 1 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTA.............................................................. 22 1 2 1.50 3 0 0 1 0 2 0 0
.......................................................................................................TGTGCAAATCCATGCACAACTGAATC.......................................................... 26 3 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCTATGCAAAACTGACTC.......................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................GTGCAAATCCATGCAAAACTGA............................................................. 22 0 2 1.00 2 0 0 1 0 1 0 0
.......................................................................................................TGTGCAAATCCATGCAAACCTGTCTC.......................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGACTGCA........................................................ 28 2 1 1.00 1 0 0 1 0 0 0 0
.................................................................AGTTTTGCAGGTTTGCATCCAGA................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0
.................................................................AGTTTTGCAGGTTTGCATCCAGCA.................................................................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................TGTGCAAATCCATGCAA................................................................... 17 0 2 1.00 2 0 0 0 0 2 0 0
.......................................................................................................TGTGCAAATCCATGCAAAAC................................................................ 20 0 2 1.00 2 0 0 1 0 1 0 0
.......................................................................................................TGTGCAAATCCATTCAAAACTGT............................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTT.............................................................. 22 1 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAACCTGT............................................................. 23 2 2 0.50 1 0 0 0 0 0 1 0
.......................................................................................................TGTGCAAATCCATGCAACACTGAATC.......................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAACCT............................................................... 21 1 2 0.50 1 0 0 0 0 0 1 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGAA............................................................ 24 1 2 0.50 1 0 0 0 0 1 0 0
.......................................................................................................TGTGCAAATCCATGCAACACTGA............................................................. 23 1 2 0.50 1 0 0 0 0 0 0 1
.......................................................................................................CGTGCAAATCCATGCAAAACTGAATC.......................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGTAT........................................................... 25 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGGATC.......................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................TGTGCAAATCCCTGCAAAACTGA............................................................. 23 1 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAGAACTGAATC.......................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAATCTGA............................................................. 23 1 2 0.50 1 0 0 0 1 0 0 0
...........................................................................................................CAAATCCATGCAAAACTGAATC.......................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TGCGCAAATCCATGCAAAACTGAATC.......................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTTA............................................................. 23 1 2 0.50 1 0 0 0 0 1 0 0
.........................................................................................................TCCAAATCCATGCAAAACTGAATC.......................................................... 24 3 4 0.50 2 2 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAACACTGT............................................................. 23 2 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................................TGTGCAAATCCATGCA.................................................................... 16 0 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCCTTGCAAAACTGAATC.......................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TGCGCAAATCCATGCAAAACTG.............................................................. 22 1 2 0.50 1 0 0 0 0 0 1 0
.......................................................................................................TGTGTAAATCCATGCAAAACTGT............................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTGAAA........................................................... 25 2 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................................CGTGCAAATCCATGCAAAACTGT............................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCAATGCAAAACTGAATC.......................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATCCAAAACTGAATC.......................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCACAACTGT............................................................. 23 2 3 0.33 1 0 0 0 0 1 0 0
.......................................................................................................TGTGCAAATCCATGCAAAACTTT............................................................. 23 2 3 0.33 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCACATCCATGCAAAACTGAATC.......................................................... 26 3 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................TGTTCAAATCCATGCAAAACTGAATC.......................................................... 26 3 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................................TGTGCAAATCCATGTAAAACT............................................................... 21 1 4 0.25 1 0 0 1 0 0 0 0
.......................................................................................................TGTGCAAATCCATGCAAAAATC.............................................................. 22 2 6 0.17 1 0 1 0 0 0 0 0

Anti-sense strand reads

ATCTTGAGGTCGAAGCCGGACAGCGGGTTAGTTTGACAGGACAATGACTTGTGACAAGATACCAATCAAAACGTCCAAACGTAGGTCGACACACTATAAGACGACACGTTTAGGTACGTTTTGACTGACACCATCACTTTTCAGACATCTTTTCATTCCCTTTGAGTTTGGGGAAAGATGTGTCCAA

***********************************.........(((...(((((..(((((((((((((((((((((((((..((((.............)))))))))).)).))))))))))))))))))))))...))).........*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:15 PM