ID:

mml-mir-198

Coordinate:

chr2:40502230-40502291 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AGAATGCACTAGCCTTTTGATTTGATAAGTTATAAATTCTGTGGTTCTGATCATTGGTCCAGAGGGGAAATAGGTTCCTGTGATTTTTCCTTCTTCTCTGTAGAATAAATGAAATCTCGTTGTTAGAACAAGAAATGTCAGATGGCCAAAAACAAGATGACC

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Read size # Mismatch Hit Count Total Norm Total SRR116839

testes
SRR116844

epididymis
........................................................................................................................TGTTAGAACAAGAAATGTCAGATGGCC............... 27 0 1 6.00 6 6 0
........................................................................................................................TGTTAGAACAAGAAATGTCAGATGGCCA.............. 28 0 1 2.00 2 2 0
....................................................................................TTTTCCTTCTTCTCTGTAGAATATC..................................................... 25 2 1 1.00 1 0 1
........................................................................................................................TGTTAGAACAAGAAATGTCAGATGGC................ 26 0 1 1.00 1 1 0
...........................................................................................................................TAGAACAAGAAATGTCAGATGGCCAA............. 26 0 1 1.00 1 1 0
.......................................................................................................................TTGTTAGAACAAGAAATGTCAGATGGC................ 27 0 1 1.00 1 1 0

Anti-sense strand reads

TCTTACGTGATCGGAAAACTAAACTATTCAATATTTAAGACACCAAGACTAGTAACCAGGTCTCCCCTTTATCCAAGGACACTAAAAAGGAAGAAGAGACATCTTATTTACTTTAGAGCAACAATCTTGTTCTTTACAGTCTACCGGTTTTTGTTCTACTGG

***********************************.(((....((((((..........(((((((((...(((..............))))))))))))))))))....)))..............***********************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM