ID:

mml-mir-197

 Coordinate:

chr1:113360995-113361069 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.8 -42.0 -41.9

Sense Strand Reads

TTGCAGTCCCTGGCCCAACACCGAAATCCTGCTGGAATCTGTGCTCCGGGGGCTGTGCCGGGTAGAGAGGGCAGTGGGAGGTAAGAGCTCTTCACCCTTCACCACCTTCTCCACCCAGCATGGCCGGCACACTTTGGTCTACGGCACATCTCCAAGTATAGAGTGGGTTTTGAAT

*******************************************..((...((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).)))))))))).......***************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116839

testes
.................................................................................................TTCACCACCTTCTCCACCCAGCATC..................................................... 25 1 1 509.00 509 337 172 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGC........................................................ 22 0 1 22.00 22 0 0 8 10 1 3 0
.................................................................................................TTCACCACCTTCTCCACCCAGAATC..................................................... 25 2 1 21.00 21 16 5 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCAATC.................................................... 26 3 1 17.00 17 13 4 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGTATC..................................................... 25 2 1 12.00 12 6 6 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGATC...................................................... 24 3 6 5.67 34 26 8 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAG......................................................... 21 0 1 5.00 5 0 0 3 1 1 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCAA...................................................... 24 1 1 5.00 5 3 0 2 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCA....................................................... 23 0 1 4.00 4 0 0 2 1 0 1 0
..........................................................CGGGTAGAGAGGGCAGTGGGAGG.............................................................................................. 23 0 1 4.00 4 0 0 1 2 0 1 0
.................................................................................................TTCACCACCTTCTCCACCCAGCATATC................................................... 27 2 1 3.00 3 1 2 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCATTTCC.................................................. 28 2 1 3.00 3 3 0 0 0 0 0 0
..................................................................................................TCACCACCTTCTCCACCCAGCAATC.................................................... 25 3 1 3.00 3 2 1 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCCTC..................................................... 25 2 1 3.00 3 0 3 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCCGCATC..................................................... 25 2 1 3.00 3 2 1 0 0 0 0 0
..........................................................CGGGTAGAGAGGGCAGTGGGAGT.............................................................................................. 23 1 1 3.00 3 0 0 0 0 2 0 1
...............................................................................................CCTTCACCACCTTCTCCACCCAGTATC..................................................... 27 2 1 2.00 2 0 2 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAT......................................................... 21 1 1 2.00 2 0 0 0 2 0 0 0
.................................................................................................TTCACCACCTTCTCCCCCCAGCATC..................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0
..................................................................................................TCACCACCTTCTCCACCCAGCATC..................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0
.................................GGAATCTGTGCTCCGGGGGCTGTGCATC.................................................................................................................. 28 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCACCTTCTACACCCAGCATC..................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................CGGGTAGAGAGGGCAGTGGAAAG.............................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0
..........................................................CGGGTAGAGAGGGCAGTGGAAA............................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGAT....................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACTCAGCATC..................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCTTATC................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGA........................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCTTC..................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGAA....................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCAT...................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0
.........................................................CCGGGTAGAGAGGGCAGTGA.................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................ACCACCTTCTCCACCCAGCATC..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCATCATC..................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCCCCTTCTCCACCCAGCATC..................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCGCCTTCTCCACCCAGC........................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
................................TGGAATCTGTGCTCCGGGGGCTGTGCATC.................................................................................................................. 29 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCAAATC................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0
................................................................................................CTTCACCACCTTCTCCACCCAGCATC..................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................CTCACCACCTTCTCCACCCAGCATC..................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TTCAGCACCTTCTCCACCCAGCATC..................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGCATA..................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................ATCACCACCTTCTCCACCCAGCATC..................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................CGGGTAGAGAGGGCAGTGAAA................................................................................................ 21 2 2 0.50 1 0 0 0 0 0 1 0
..........................................................CGGGTAGAGAGGGCAGTGAGAA............................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0
.................................................................................................TTCACCACCTTCTCCCCCCAGCCTC..................................................... 25 3 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................TTCACCACCTTCTCCACCCAGTTC...................................................... 24 3 7 0.14 1 1 0 0 0 0 0 0
..........................................................CGGGTAGAGAGGGCAGTGAA................................................................................................. 20 2 11 0.09 1 0 0 0 0 0 1 0
..........................................................CGGGTAGAGAGGGCTG..................................................................................................... 16 1 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

AACGTCAGGGACCGGGTTGTGGCTTTAGGACGACCTTAGACACGAGGCCCCCGACACGGCCCATCTCTCCCGTCACCCTCCATTCTCGAGAAGTGGGAAGTGGTGGAAGAGGTGGGTCGTACCGGCCGTGTGAAACCAGATGCCGTGTAGAGGTTCATATCTCACCCAAAACTTA

*****************************************..((...((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).)))))))))).......******************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:02 PM