ID:

mml-mir-194-1

 Coordinate:

chr1:150787962-150788046 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.6 -40.5 -40.4
mature

  1. mml-mir-194-1  chr1:150787976-150787997 +
  2. mml-mir-194-2  chr14:9809337-9809358 +
star

Sense Strand Reads

GATAATGTACAGATCCCATGATGAGCAAAAGGATTCTCCTTATATGTTTAATGGTGTTATCAAGTGTAACAGCAACTCCATGTGGACTGTGTACCAATTTCCAGTGGAGATGCTGTTACTTTTGATGGTTACCAACTTGACACAATATAAAGGTATAATAAAGAAAGACAGAAAATTGTGGTCAC

***********************************....(((((((((((((((((.(((((((.(((((((((.((((((.((((..((......)).)))))))))).))))))))).)))))))..)))))..)))).)).))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle		 SRR116843

cortex		 SRR116841

prostate
................................................................TGTAACAGCAACTCCATGTGGAATC................................................................................................ 25 2 2 39.00 78 53 25 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGTGGATC................................................................................................. 24 2 2 13.50 27 21 6 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGTGGA................................................................................................... 22 0 2 4.50 9 0 0 2 1 2 2 2
................................................................TGTAACAGCAACTCCATGTGGAAT................................................................................................. 24 1 2 3.50 7 3 1 0 2 0 1 0
................................................................TGTAACAGCAACTCCATGTGGACTC................................................................................................ 25 1 1 2.00 2 1 1 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGTGGACATC............................................................................................... 26 3 2 1.50 3 1 2 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGTGG.................................................................................................... 21 0 2 1.50 3 0 0 1 1 1 0 0
................................................................TGTAACAGCAACTCCATGTGGGATC................................................................................................ 25 3 2 0.50 1 1 0 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGTGGAT.................................................................................................. 23 1 2 0.50 1 0 0 1 0 0 0 0
.................................................................GTAACAGCAACTCCATGTGGAATC................................................................................................ 24 2 2 0.50 1 0 1 0 0 0 0 0
................................................................AGTAACAGCAACTCCATGTGGAATC................................................................................................ 25 3 2 0.50 1 1 0 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGGGGAATC................................................................................................ 25 3 2 0.50 1 1 0 0 0 0 0 0
................................................................TGTAACAGCAACTCCATCTGGAATC................................................................................................ 25 3 2 0.50 1 1 0 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGTGGACG................................................................................................. 24 1 2 0.50 1 0 0 1 0 0 0 0
................................................................TGTAACAGCACCTCCATGTGGATC................................................................................................. 24 3 2 0.50 1 0 1 0 0 0 0 0
................................................................TGTAACAGCAACTCCATGTG..................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0 0
.................................................................TTAACAGCAACTCCATGTGGAATC................................................................................................ 24 3 3 0.33 1 0 1 0 0 0 0 0
................................................................TGTAACAGCCACTCCATGTGGAATC................................................................................................ 25 3 3 0.33 1 0 1 0 0 0 0 0

Anti-sense strand reads

CTATTACATGTCTAGGGTACTACTCGTTTTCCTAAGAGGAATATACAAATTACCACAATAGTTCACATTGTCGTTGAGGTACACCTGACACATGGTTAAAGGTCACCTCTACGACAATGAAAACTACCAATGGTTGAACTGTGTTATATTTCCATATTATTTCTTTCTGTCTTTTAACACCAGTG

***********************************....(((((((((((((((((.(((((((.(((((((((.((((((.((((..((......)).)))))))))).))))))))).)))))))..)))))..)))).)).))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:05 PM