ID:

mml-mir-1911

 Coordinate:

chrX:113661262-113661320 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.6

Sense Strand Reads

GCATCCATCATCTGCCACTGGGTATCCATCATCATTTGCTCGGCATCTGCTGAGTACCGCCATGTCTGTTGGGCATCCACAGTCTCCCACCAGGCATTGTGGTCTCTGCTGACGCTTTGCCATTTCACCACTGGTGCCTTCCATGAGAATGCTGGTTAC

***********************************..((..(((.((.((.(((.(((((.(((((((.((((............)))).))))))).)))))))).)).)).)))..))...************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116845

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116843

cortex
..................................................TGAGTACCGCCATGTCTGTTGGG...................................................................................... 23 0 1 3.00 3 1 0 1 1 0
..................................................TGAGTACCGCCATGTCTGTTGGA...................................................................................... 23 1 1 3.00 3 3 0 0 0 0
.......................................................................................CACCAGGCATTGTGGTCTCTG................................................... 21 0 1 2.00 2 2 0 0 0 0
..................................................TGAGTACCGCCATGTCTGTTGGAA..................................................................................... 24 2 1 2.00 2 1 0 0 0 1
..................................................TGAGTACCGCCATGTCTGTTGGGT..................................................................................... 24 1 1 2.00 2 2 0 0 0 0
..................................................TGAGTACCGCCATGTCTGTTGG....................................................................................... 22 0 1 2.00 2 2 0 0 0 0
..................................................TGAGTACCGCCATCTCTGTTGATC..................................................................................... 24 3 1 1.00 1 0 1 0 0 0
........................................................................................ACCAGGCATTGTGGTCTCT.................................................... 19 0 1 1.00 1 1 0 0 0 0
.......................................................................................CACCAGGCATTGTGGTCTCTGCAT................................................ 24 2 1 1.00 1 1 0 0 0 0
.......................................................................................CACCAGGCATTGTGGTCTCTGAT................................................. 23 1 1 1.00 1 1 0 0 0 0
..................................................TGAGTACCGCCATGTCTGTTGA....................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................CACCAGGCATTGTGGTCTCT.................................................... 20 0 1 1.00 1 1 0 0 0 0
..................................................TGAGTACCGCCATGTCTGTTTA....................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..................................................TGAGTACCGCCATGTCTGTTGGGAAT................................................................................... 26 1 1 1.00 1 1 0 0 0 0
..................................................TGAGTACCGCCATGTCTGTTTT....................................................................................... 22 2 1 1.00 1 1 0 0 0 0
.......................................................................................CACCAGGCATTGTGGTCTC..................................................... 19 0 1 1.00 1 1 0 0 0 0
.......................................................................................CACCAGGCATTGTGGTCTCTGAA................................................. 23 2 1 1.00 1 1 0 0 0 0
..................................................TGAGTACCGCCATGTCTGTTTATC..................................................................................... 24 3 2 0.50 1 0 1 0 0 0

Anti-sense strand reads

CGTAGGTAGTAGACGGTGACCCATAGGTAGTAGTAAACGAGCCGTAGACGACTCATGGCGGTACAGACAACCCGTAGGTGTCAGAGGGTGGTCCGTAACACCAGAGACGACTGCGAAACGGTAAAGTGGTGACCACGGAAGGTACTCTTACGACCAATG

************************************..((..(((.((.((.(((.(((((.(((((((.((((............)))).))))))).)))))))).)).)).)))..))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:35 PM