ID:

mml-mir-190b

 Coordinate:

chr1:133198496-133198574 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.8 -37.7 -37.7

Sense Strand Reads

CTTTCTTTGCAACTGGGAGGAAGGCAGATGACCCCCAAAGCTCTCCTGCCTGCTTCTGTGTGATATGTTTGATATTGGGTTGTTTAATTAGGAACCAACTAAATGTCAAACATATTCTTACAGCAGCTGGTGATTCAGCACCACCCTCTTTCATACTTCAATCTCTGGGGCTCCTGTCT

***********************************....(((.....(((.(((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).))).))).....))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116839

testes		 SRR116840

epididymis
............................................................TGATATGTTTGATATTGGGTTGATC.............................................................................................. 25 2 1 39.00 39 33 6 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTGTATC............................................................................................. 26 2 1 21.00 21 18 3 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTGT................................................................................................ 23 0 1 7.00 7 0 0 6 0 0 1
............................................................TGATATGTTTGATATTGGGTTG................................................................................................. 22 0 1 6.00 6 0 0 2 2 1 1
............................................................TGATATGTTTGATATTGGGTTGAATC............................................................................................. 26 3 1 4.00 4 2 2 0 0 0 0
.............................................................GATATGTTTGATATTGGGTTGTATC............................................................................................. 25 2 1 2.00 2 2 0 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTTATC.............................................................................................. 25 3 1 2.00 2 2 0 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTATC............................................................................................... 24 2 1 2.00 2 0 2 0 0 0 0
............................................................TGATATGTTTGATATTTGGTTG................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0
............................................................TGATATGTTTGATATTGGGTTGTTTATC........................................................................................... 28 2 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTGATT.............................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATTGTGTTGTATC............................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTGAATA............................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTGTA............................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0
............................................................TGATATGTTTGATATTGGGTTATATC............................................................................................. 26 3 1 1.00 1 0 1 0 0 0 0
............................................................TGATATGTTTGATATTGGGTTT................................................................................................. 22 1 1 1.00 1 0 0 0 0 1 0
............................................................TGATATGTTTGATATTAGGTTATC............................................................................................... 24 3 4 0.25 1 0 1 0 0 0 0
............................................................TGATATGTTTGATATTGGGTATC................................................................................................ 23 3 17 0.12 2 0 2 0 0 0 0

Anti-sense strand reads

GAAAGAAACGTTGACCCTCCTTCCGTCTACTGGGGGTTTCGAGAGGACGGACGAAGACACACTATACAAACTATAACCCAACAAATTAATCCTTGGTTGATTTACAGTTTGTATAAGAATGTCGTCGACCACTAAGTCGTGGTGGGAGAAAGTATGAAGTTAGAGACCCCGAGGACAGA

***********************************....(((.....(((.(((.(((((.(((((((((((((((.((((((((......))).))))).)))))))))))))))..))))).))).))).....))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
...................................................................................................................................CTAAGTCGTGCTGGGA................................ 16 1 16 0.06 1 1

Generated: 09/01/2015 at 12:03 PM