ID:

mml-mir-187

 Coordinate:

chr18:29819491-29819599 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-63.1 -62.9 -62.9

Sense Strand Reads

AGCAGAAGCTGGGCAGCCCAGCTGGAAGAGGAGGCCGGGCAGGTGTTGCAGGTCAGGCTCACTATGACACAGTGTGAGACCTCGGGCTACAACACAGGACCCGGGTGCTGCTCTGACCCCTCGTGTCTTGTGTTGCAGCCGGAGGGACGCAGGTCCGCAGCAGAGCCTGTTCCGCTGTCCTGAGGGACTCAACACAGGGGACTGCACAG

***********************************((((((((((((((........(((((..((...))..))))).((((.((((.(((((((((((..((((.........)))).....))))))))))).)))).))))(((....))).)))))...))))).))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116841

prostate		 SRR116845

epididymis		 SRR116844

epididymis
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGG................................................................... 22 0 1 41.00 41 34 5 1 1 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGT.................................................................. 23 1 1 34.00 34 19 9 5 1 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGTT................................................................. 24 2 1 31.00 31 16 5 7 3 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGTA................................................................. 24 2 1 11.00 11 8 2 0 1 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGTTT................................................................ 25 3 1 9.00 9 5 3 1 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCG.................................................................... 21 0 1 6.00 6 3 1 2 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGT................................................................... 22 1 1 6.00 6 4 1 1 0 0 0
........................................................................................................................TCGTGTCTTGTGTTTCAGCCGG................................................................... 22 1 1 6.00 6 6 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGAA................................................................. 24 1 1 5.00 5 4 1 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTTCAGCCGGT.................................................................. 23 2 1 4.00 4 2 0 1 1 0 0
........................................................................................................................TCGTGTCTTGTGTTTCAGCCGGTT................................................................. 24 3 1 4.00 4 2 0 2 0 0 0
........................................................................................................................TCGTGTCTTGTTTTGCAGCCGGTT................................................................. 24 3 1 4.00 4 4 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGTAT................................................................ 25 3 1 4.00 4 3 1 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGA.................................................................. 23 0 1 4.00 4 3 0 1 0 0 0
........................................................................................................................TCGTGTCTTTTGTTGCAGCCGGT.................................................................. 23 2 1 3.00 3 3 0 0 0 0 0
........................................................................................................................TCGTGTCTTTTGTTGCAGCCGG................................................................... 22 1 1 3.00 3 2 1 0 0 0 0
........................................................................................................................TCGTGTCTTGTTTTGCAGCCGGT.................................................................. 23 2 1 2.00 2 1 0 1 0 0 0
........................................................................................................................TCGTGTCTTGTTTTGCAGCCGG................................................................... 22 1 1 2.00 2 1 0 1 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGTAA................................................................. 24 2 1 2.00 2 1 0 1 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGTAA................................................................ 25 3 1 2.00 2 2 0 0 0 0 0
.......................................................................................................................CTCGTGTCTTGTGTTGCAGCCGG................................................................... 23 0 1 2.00 2 1 1 0 0 0 0
.........................................................................................................................CGTGTCTTGTGTTGCAGCCGGT.................................................................. 22 1 1 2.00 2 1 0 0 1 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGATC................................................................ 25 2 1 2.00 2 0 0 0 0 1 1
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGGT................................................................. 24 2 1 2.00 2 1 1 0 0 0 0
.......................................................................................................................CTCGTGTCTTGTGTTGCAGCCGATC................................................................. 25 3 1 1.00 1 0 0 0 0 1 0
........................................................................................................................TCGTGTCTTGTGTTTCAGCCGGAT................................................................. 24 2 1 1.00 1 0 0 1 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCC..................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCATCCGG................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................CTCGTGTCTTGTGTTTCAGCCG.................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................CTCGTGTCTTGTGTTGCAGCCG.................................................................... 22 0 1 1.00 1 0 0 1 0 0 0
........................................................................................................................TCGTGTCTTGTTTTGCAGCCGGA.................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGAT................................................................. 24 1 1 1.00 1 0 0 1 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGTTA................................................................ 25 3 1 1.00 1 0 0 1 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGAA.................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................CGTGTCTTGTGTTGTAGCCGGTT................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCATCCGGT.................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTTCAGCCGGA.................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGA................................................................... 22 1 1 1.00 1 0 0 0 1 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGATC................................................................. 24 3 1 1.00 1 0 0 0 0 1 0
........................................................................................................................TCGTGTCTTGTGTTTCAGCCGGAA................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................CTCGTGTCTTGTGTTGCAGCCGGT.................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTGCAGCCGGAATC............................................................... 26 3 1 1.00 1 0 0 0 0 0 1
........................................................................................................................TCGTGTCTTGTATTGCAGCCGGT.................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................CGTGTCTTGTGTTGCAGCCGGCTT................................................................ 24 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTTTTTCAGCCGG................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................CGTGTCTTGTGTTTCAGCCGGTA................................................................. 23 3 2 0.50 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTGTGTTTCAGCCGTT.................................................................. 23 3 3 0.33 1 0 0 1 0 0 0
........................................................................................................................TCGTGTCTTTTTTTGCAGCCGA................................................................... 22 3 4 0.25 1 1 0 0 0 0 0
........................................................................................................................TCGTGTCTTTTGTTTCATCCGG................................................................... 22 3 7 0.14 1 0 0 0 1 0 0
........................................................................................................................TCGTGTCTTGTTTTTCAGCCGT................................................................... 22 3 10 0.10 1 1 0 0 0 0 0

Anti-sense strand reads

TCGTCTTCGACCCGTCGGGTCGACCTTCTCCTCCGGCCCGTCCACAACGTCCAGTCCGAGTGATACTGTGTCACACTCTGGAGCCCGATGTTGTGTCCTGGGCCCACGACGAGACTGGGGAGCACAGAACACAACGTCGGCCTCCCTGCGTCCAGGCGTCGTCTCGGACAAGGCGACAGGACTCCCTGAGTTGTGTCCCCTGACGTGTC

***********************************((((((((((((((........(((((..((...))..))))).((((.((((.(((((((((((..((((.........)))).....))))))))))).)))).))))(((....))).)))))...))))).))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:14 PM