ID:

mml-mir-149

 Coordinate:

chr12:104618828-104618916 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.5 -50.5 -50.5

Sense Strand Reads

NNNNNNNNNNNNNGGGGGCCGCCTCGGTCCAGCCTGCCCGGGGCTCCCAGGCCGGCGCCCAAGCTCTGGCTCCGTGTCTTCACTCCCGTGTTTGTCCGAGGAGGGAGGGAGGGACGGGGGCTGTGCTGGGGCAGCCGGAACAGCGCAGGTCACCGGGCTGGCTGGGCGAGGTGGCCGGGCAGGGCTAGG

*************************************************..(((((((((.(((..(((((((((.(((((.(((((...............)))))))))).)).))))))).))).)))).)))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116843

cortex		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate
................................................................TCTGGCTCCGTGTCTTCACTCCCATC................................................................................................... 26 2 1 215.00 215 177 0 38 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCATC.................................................................................................... 25 3 1 170.00 170 142 0 28 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTATC...................................................................................................... 23 2 1 36.00 36 29 0 7 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCC...................................................................................................... 23 0 1 27.00 27 0 26 0 0 1 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGC............................................................... 22 0 1 16.00 16 0 15 0 1 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCTC.................................................................................................... 25 2 1 8.00 8 4 0 4 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCATC..................................................................................................... 24 3 2 6.50 13 11 0 2 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCT.............................................................. 23 0 1 6.00 6 0 6 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCC....................................................................................................... 22 0 1 6.00 6 0 2 0 2 1 1
................................................................TCTGGCTCCGTGTCTTCACTCCCTTATC................................................................................................. 28 3 1 5.00 5 5 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCCTC................................................................................................... 26 2 1 5.00 5 5 0 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCA.............................................................. 23 1 1 4.00 4 0 4 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTG................................................................ 21 0 1 4.00 4 0 4 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGT................................................................. 20 0 1 4.00 4 0 4 0 0 0 0
................................................................TCTGGCTCCGTTTCTTCACTCCCATC................................................................................................... 26 3 1 4.00 4 4 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCAT.................................................................................................... 25 1 1 3.00 3 2 0 1 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCTTT............................................................ 25 2 1 3.00 3 0 3 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCGATC.................................................................................................. 27 3 1 3.00 3 3 0 0 0 0 0
................................................................TCTGGCTCCGTGTTTTCACTCCCATC................................................................................................... 26 3 1 2.00 2 2 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCAT..................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTC........................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCTT.................................................................................................... 25 1 1 2.00 2 0 2 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCAA............................................................. 24 2 1 2.00 2 0 2 0 0 0 0
.........................................................................................................AGGGAGGGACGGGGGCTGTGC............................................................... 21 0 1 2.00 2 0 2 0 0 0 0
................................................................TCTGTCTCCGTGTCTTCACTCCC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCA..................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCGTAG.................................................................................................. 27 2 1 1.00 1 0 0 1 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCTATC................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
................................................................TCGGGCTCCGTGTCTTCACTCCCATC................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
................................................................TCTAGCTCCGTGTCTTCACTCCCATC................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCTTTT........................................................... 26 3 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCAA.................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCT...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACT......................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0
................................................................ACTGGCTCCGTGTCTTCACTCCCATC................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................AGGGAGGGACGGGGGCTGTGCT.............................................................. 22 0 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTCTCTTCACTCCCATC................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
................................................................TCTGGCTCCGTGTCGTCATTCCC...................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0
.......................................................................................GTGTTTGTCCGAGGAGG..................................................................................... 17 0 1 1.00 1 0 0 0 1 0 0
.........................................................................................................AGGGAGGGACGGGCGCTGTGCT.............................................................. 22 1 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCTGTGTCTTCACTCCC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................AGGGAGGGACGGGGGCTGTGCAT............................................................. 23 2 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCTC..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCCTAC................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0
................................................................TCTGGCTCCGTTTCTTCACTCCC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.........................................................................................................AGGGAGGGACGGGGGCTGTGCTTT............................................................ 24 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCAT............................................................. 24 2 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCCCTCCCATC................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCCCTCCC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCTC...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................AGGGAGGGACGGGGGCTGTGCTT............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCAA..................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCTT............................................................. 24 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGA............................................................... 22 1 2 0.50 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACAATC...................................................................................................... 23 3 4 0.50 2 2 0 0 0 0 0
........................................................................................................GAGGGAGGGACGGGAGCTGTGTT.............................................................. 23 2 2 0.50 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCATC............................................................ 25 3 5 0.40 2 2 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACATC....................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCCAATC................................................................................................... 26 3 9 0.33 3 1 0 2 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGAA.............................................................. 23 2 3 0.33 1 0 0 0 0 1 0
................................................................TCTGGCTCCGTGTCCTCACTCCCATC................................................................................................... 26 3 4 0.25 1 1 0 0 0 0 0
................................................................TCTTTCTCCGTGTCTTCACTCC....................................................................................................... 22 2 4 0.25 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACCCCCATC................................................................................................... 26 3 4 0.25 1 1 0 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGCATT............................................................ 25 3 4 0.25 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGTA.............................................................. 23 2 5 0.20 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGT............................................................... 22 1 5 0.20 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCCCTCCTC..................................................................................................... 24 3 6 0.17 1 1 0 0 0 0 0
.........................................................................................................AGGGAGGGACGGGGGCTGTGT............................................................... 21 1 6 0.17 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGAGGGGGGCTGTG................................................................ 21 1 7 0.14 1 0 1 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGTAC............................................................. 24 3 7 0.14 1 1 0 0 0 0 0
..................................................................TGGCTCAGTGTCTTCACTCCCATC................................................................................................... 24 3 10 0.10 1 1 0 0 0 0 0
................................................................TCTGCCTCCGTGTCTTCACTATC...................................................................................................... 23 3 10 0.10 1 1 0 0 0 0 0
................................................................TCTGGCTCCGTGTCTTCACTCACATC................................................................................................... 26 3 10 0.10 1 0 0 1 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGAAT............................................................. 24 3 11 0.09 1 0 1 0 0 0 0
................................................................TCTGGCTCTGTGTCTTCACTCCCATC................................................................................................... 26 3 11 0.09 1 1 0 0 0 0 0
........................................................................................................GAGGGAGGGACGGGGGCTGTGTAA............................................................. 24 3 12 0.08 1 0 1 0 0 0 0
................................................................TCTGGCTCCGTGTTTTCACATC....................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

NNNNNNNNNNNNNCCCCCGGCGGAGCCAGGTCGGACGGGCCCCGAGGGTCCGGCCGCGGGTTCGAGACCGAGGCACAGAAGTGAGGGCACAAACAGGCTCCTCCCTCCCTCCCTGCCCCCGACACGACCCCGTCGGCCTTGTCGCGTCCAGTGGCCCGACCGACCCGCTCCACCGGCCCGTCCCGATCC

************************************************..(((((((((.(((..(((((((((.(((((.(((((...............)))))))))).)).))))))).))).)))).)))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:08 PM