ID:

mml-mir-137

 Coordinate:

chr1:101827140-101827241 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.7 -42.7 -42.7

Sense Strand Reads

GGCAGCGGCGGCAGTAGCAGCGGCAGCGGTAGCAGCGGCAGCGGCAGCTTGGTCCTCTGACTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGATTACGTTGTTATTGCTTAAGAATACGCGTAGTCGAGGAGAGTACCAGCGGCAGGGGGGCAGCGGCCGCCCTCCCCAGCCCACCAGCTGGCCACTAAACGCCC

*********************************************************..(((((((((((..(((.(((((((((((((.((((((((.....)).))))))))))))))))))).)))..)))))))))))....******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116844

epididymis		 SRR116839

testes		 SRR116845

epididymis
............................................................................................................TTATTGCTTAAGAATACGCGTAG....................................................................... 23 0 1 715.00 715 686 19 4 5 0 1 0
............................................................................................................TTATTGCTTAAGAATACGCGTA........................................................................ 22 0 1 609.00 609 593 8 5 3 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGT......................................................................... 21 0 1 342.00 342 338 0 3 1 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAG....................................................................... 22 0 1 72.00 72 67 2 0 2 0 1 0
............................................................................................................TTATTGCTTAAGAATACGCGTAA....................................................................... 23 1 1 57.00 57 56 1 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAGT...................................................................... 23 0 1 46.00 46 44 1 0 1 0 0 0
............................................................................................................TTATTGCTTAATAATACGCGTA........................................................................ 22 1 1 44.00 44 44 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTA........................................................................ 21 0 1 39.00 39 39 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGT...................................................................... 22 0 1 36.00 36 31 2 3 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGT......................................................................... 20 0 1 34.00 34 34 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGA...................................................................... 22 1 1 24.00 24 23 0 0 0 0 1 0
............................................................................................................TTATTGCTTAAGAATACGCGTAGT...................................................................... 24 0 1 21.00 21 21 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAT....................................................................... 23 1 1 21.00 21 21 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAG....................................................................... 21 0 1 20.00 20 19 1 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAGA...................................................................... 23 1 1 16.00 16 16 0 0 0 0 0 0
............................................................................................................TTATTGCTTAATAATACGCGTAG....................................................................... 23 1 1 15.00 15 15 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAGA...................................................................... 24 1 1 15.00 15 13 1 0 0 0 1 0
............................................................................................................TTATTGCTTAAGAATACGCTTAG....................................................................... 23 1 1 14.00 14 14 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGATAAT........................................................................................................... 23 0 1 13.00 13 12 0 0 0 0 1 0
............................................................................................................TTATTGCTTAAGAATACTCGTAG....................................................................... 23 1 1 12.00 12 12 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAGATC.................................................................... 26 3 1 10.00 10 0 0 0 0 10 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTT........................................................................ 22 1 1 8.00 8 8 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGAT.............................................................................................................. 20 0 1 7.00 7 7 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATGCGCGTA........................................................................ 22 1 1 6.00 6 6 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGAA..................................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0
............................................................................................................TTATTTCTTAAGAATACGCGTA........................................................................ 22 1 1 5.00 5 5 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACTCGTA........................................................................ 22 1 1 5.00 5 5 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCG.......................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0
............................................................................................................TTATTGCTTAATAATACGCGT......................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAGAA..................................................................... 24 2 1 4.00 4 3 0 0 0 0 1 0
............................................................................................................TTATTGCTTAAGAATACGCTT......................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0
...............................................................................................................TTGCTTAAGAATACGCGTAGA...................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCTTA........................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACTCGT......................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAATC..................................................................... 25 1 1 3.00 3 0 0 0 0 0 0 3
..............................................................................................TACGGATTACGTTGTTATTGCTT..................................................................................... 23 0 1 3.00 3 3 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAC....................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCTT......................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAACAATACGCGT......................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGATAA............................................................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAT....................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGTGTAG....................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGATAT............................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTTCTTAAGAATACGCGTAA....................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGTA..................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAGAA..................................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATAAGCGTA........................................................................ 22 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................................GCGTAGTTATTGCTTAAGAATAC............................................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAAAATACGCGTAG....................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAAA...................................................................... 24 2 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATAC............................................................................. 17 0 1 2.00 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTTAATAATACGCGTAT....................................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
........................................................................................................GTAGTTATTGCTTAAGAATACGC........................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAAA...................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTATA...................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAACAATACGCGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAATAATACGCGTC........................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATCCGCGT......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGATA............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGATAATT.......................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TTGCTTAAGAATACGCGTAGAA..................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACGGGTATTCTTTGGTGGATA............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TTGCTTAAGAATACGCGTAGAAA.................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TAATTGCTTAAGAATACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACCCGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAAAACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TTTGCTTAAGAATACGCGTAG....................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTA........................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTCTTGCTTAAGAATACGCGT......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAATAATACGCGTAGT...................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAATAATACGCGTAG....................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAGAT..................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGAAA.................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TACTGCTTAAGAATACGCGTAGT...................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAATAATACGCTTAG....................................................................... 23 2 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCTTAGTA..................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................ATATTGCTTAAGAATGCGCGTAG....................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTACGAATACGCGTAG....................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGATTACGCGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTGAGAATACGCGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................CGGACTTATTGCTTAAGAATACGCGTAG....................................................................... 28 3 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGA......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATGCGCGTAG....................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGTATACGCGTAG....................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAACACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGTT..................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGG...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................ACGGATTACGTTGTTATTGCTT..................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGATTACGCGT......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
......................................................CTCTGACTCTCTTCGGTG.................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 1 0
............................................................................................................TTATTGCTTAAGAATACGCGTGA....................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAGTAA.................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAGGA..................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGTGTAA....................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGTTTAAGAATACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................ATATTGCTTAATAATACGCGTA........................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACACGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TCTTGCTTAAGAATACGCGTA........................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGCAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGCATACGCGT......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTCTTGCTTAAGAATACGCGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGTAA.................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATATGCGT......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................ATGCTTAAGAATACGCGT......................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTTAGAATACGCTTA........................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTG........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGAGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATCCACGTAG....................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................TTATTGCTTAAGACTACGCGT......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACGGGTATTCTTTGGTGTATAAT........................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTGG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGTGTGGATAAT........................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................AATTATTGCTTAAGAATACGCGTAG....................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAATAATACGCGTA........................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATCCGCGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................TTTGCTTAAGAATACGCGTA........................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAACAATACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATAAGCGTAA....................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTACTTAAGAATACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGATT............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TTGCTTAAGAATACGCGTAGT...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................TTGCTTAAGAATACGCGTAGTT..................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAAGAATACGCGTAGTATC................................................................... 26 3 1 1.00 1 0 0 0 0 0 0 1
..............................................................................................................ATTTCTTAAGAATACGCGTAGT...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCTTAGT...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTATT...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TCATTGCTTAAGAATACGCGTA........................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................GACGGGTATTCTTGGGTGGAT.............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATGCGCGTAGT...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAGTT..................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTTA....................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................TTATTGCTTAATAATACGCGTAC....................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................TATTGCTTAATAATACGCGTAGA...................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACTCGTAT....................................................................... 23 2 2 1.00 2 2 0 0 0 0 0 0
............................................................................................................ATATTGCTTAAGAATACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGT......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................GCTTAAGAATACGCGTAG....................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................ACGGGTATTCTTGGGTGGATAATA.......................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGAGTAA....................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACGCGTAGG...................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCCTAAGAATACGCGTAG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAAGAATACTCTTAG....................................................................... 23 2 3 0.67 2 2 0 0 0 0 0 0
............................................................................................................TTATTGCTGAAGAATACTCGTAG....................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
...............................................................................................................................GTAGTCGAGGCGAGTAGCATC...................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0
..............................................................................................................ATTGCTTAAGAATACGTGTAGA...................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................TTATTGCTTAATAATACGCGTAA....................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
..............................................................................................................ATTGCTTAAGAATACGCGTAGATA.................................................................... 24 3 2 0.50 1 0 0 0 0 0 1 0
............................................................................................................TTATTGCTTAATAATACTCGTAG....................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................................TATTTCTTAATAATACGCGTAGA...................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0
...............................................................................................................TTGCTTAAGAATACGCGTAATTA.................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0
................................................................................................................TGCTTAAGAATACGCGTAGAAT.................................................................... 22 3 5 0.20 1 1 0 0 0 0 0 0
......................................................CTCTGACTCTCTTCGGTT.................................................................................................................................. 18 1 6 0.17 1 0 1 0 0 0 0 0

Anti-sense strand reads

CCGTCGCCGCCGTCATCGTCGCCGTCGCCATCGTCGCCGTCGCCGTCGAACCAGGAGACTGAGAGAAGCCACTGCCCATAAGAACCCACCTATTATGCCTAATGCAACAATAACGAATTCTTATGCGCATCAGCTCCTCTCATGGTCGCCGTCCCCCCGTCGCCGGCGGGAGGGGTCGGGTGGTCGACCGGTGATTTGCGGG

********************************************************..(((((((((((..(((.(((((((((((((.((((((((.....)).))))))))))))))))))).)))..)))))))))))....********************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:02 PM