ID:

mml-mir-133c

 Coordinate:

chr10:1816996-1817097 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.5 -37.5 -37.2
mature

  1. mml-mir-133c  chr10:1817055-1817076 -
  2. chr7:87956814-87956835 -
star

  1. mml-mir-133c  chr10:1817017-1817038 -
  2. chr7:87956776-87956797 -

Sense Strand Reads

TCCGCCTGGTGGAGCTGCCTTCCTCACTGACGTCGCTGTTCCTCGGATCCGGGAGCCAAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGACTGTCCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATGGCGCCGTGCGGCCCGGCTGCAGGTCCCGCAGTCACGGAGAGGACCCAGCAGGCGGT

********************************************************..(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))....******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116841

prostate		 SRR116840

epididymis		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116843

cortex		 SRR116845

epididymis		 SRR116839

testes
.......................................................................AGCTGGTAAAATGGAACCAAAT............................................................................................................. 22 0 2 127.50 255 176 41 0 29 8 0 1
.......................................................................AGCTGGTAAAATGGAACCAA............................................................................................................... 20 0 2 31.50 63 38 17 0 5 2 0 1
.............................................................................................................TTGGTCCCCTTCAACCAGCTGT....................................................................... 22 0 2 22.00 44 35 6 0 2 1 0 0
.......................................................................AGCTGGTAAAATGGAACCAAA.............................................................................................................. 21 0 2 19.50 39 28 6 0 4 1 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTATC.................................................................... 25 1 2 16.00 32 0 0 32 0 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTGTATC.................................................................... 26 1 2 7.00 14 0 0 9 0 0 5 0
.......................................................................AGCTGGTAAAATGGAACCAAATC............................................................................................................ 23 0 2 7.00 14 9 4 0 1 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTGT....................................................................... 23 0 2 6.50 13 10 2 0 0 1 0 0
.......................................................................AGCTGGTAAAATGGAACCAAT.............................................................................................................. 21 1 2 6.00 12 6 3 0 1 2 0 0
.......................................................................AGCTGGTAAAATGGAACCAAATT............................................................................................................ 23 1 2 5.00 10 8 1 0 1 0 0 0
.....................................................................AGAGCTGGTAAAATGGAACCAA............................................................................................................... 22 0 2 4.00 8 6 1 0 1 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTG........................................................................ 22 0 2 4.00 8 3 1 0 3 1 0 0
.......................................................................AGCTGGTAAAATGGAACCAAATA............................................................................................................ 23 1 2 3.50 7 3 3 0 1 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGATC..................................................................... 24 3 2 3.00 6 0 0 6 0 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTGATC..................................................................... 25 3 2 3.00 6 0 0 5 0 0 1 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGA....................................................................... 22 1 2 2.50 5 4 0 1 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTA...................................................................... 23 0 2 2.50 5 4 0 0 1 0 0 0
........................................................................GCTGGTAAAATGGAACCAAAT............................................................................................................. 21 0 2 2.00 4 1 1 0 2 0 0 0
..............................................................................................................TGGTCCCCTTCAACCAGCTGTAGATC.................................................................. 26 2 2 1.50 3 0 0 3 0 0 0 0
.....................................................................AGAGCTGGTAAAATGGAACCAAT.............................................................................................................. 23 1 2 1.50 3 3 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTG........................................................................ 21 0 2 1.50 3 2 0 0 1 0 0 0
..............................................................................................................TGGTCCCCTTCAACCAGCTGTATC.................................................................... 24 1 2 1.50 3 0 0 2 0 0 1 0
............................................................................................................TTTGGTCCCCTTCAACCAGCT......................................................................... 21 0 3 1.33 4 2 1 0 1 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTGAATC.................................................................... 26 2 2 1.00 2 0 0 1 0 0 1 0
.....................................................................AAAGCTGGTAAAATGGAACCAAAT............................................................................................................. 24 1 2 1.00 2 2 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGAATC.................................................................... 25 2 2 1.00 2 0 0 2 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTT...................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCACAT............................................................................................................. 22 1 2 1.00 2 0 1 0 0 0 0 1
............................................................................................................TTTGGTCCCCTTCAACCAGCTGA....................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAT............................................................................................................... 20 1 2 1.00 2 0 2 0 0 0 0 0
.......................................................................AGCTGGTAAAATTGAACCAAAT............................................................................................................. 22 1 3 1.00 3 1 2 0 0 0 0 0
.....................................................................AGAGCTGGTAAAATGGAACC................................................................................................................. 20 0 2 1.00 2 1 1 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAAACAAAT............................................................................................................. 22 1 3 0.67 2 2 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAATTT............................................................................................................ 23 2 3 0.67 2 0 2 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTAT....................................................................... 22 1 3 0.67 2 2 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCT......................................................................... 20 0 3 0.67 2 2 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTATC...................................................................... 23 2 3 0.67 2 0 0 2 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTTT..................................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
.....................................................................AGAGCTGGTAAAATGGAACA................................................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................AGAGCTGGTAAAATGGAACCAAAT............................................................................................................. 24 0 2 0.50 1 0 0 0 0 1 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTACATC.................................................................. 27 3 2 0.50 1 0 0 1 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAAATTA........................................................................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTAATC................................................................... 26 3 2 0.50 1 0 0 1 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCATCTGT....................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTAA..................................................................... 24 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................AAAGCTGGTAAAATGGAACCAA............................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................AGCTGGTAAAATCGAACCAA............................................................................................................... 20 1 2 0.50 1 0 0 0 0 1 0 0
.............................................................................................................TTGTTCCCCTTCAACCAGCTGTATC.................................................................... 25 2 2 0.50 1 0 0 1 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCTGCTGT....................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCCGCTGT....................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGTAACCAAAT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
............................................................................................................TTTGGTCCCCTTCAACTAGCTGTATC.................................................................... 26 2 2 0.50 1 0 0 0 0 0 1 0
........................................................................GCTGGTAGAATGGAACCAAATC............................................................................................................ 22 1 2 0.50 1 0 1 0 0 0 0 0
........................................................................GCTGGTAAAATGGAACCAAA.............................................................................................................. 20 0 2 0.50 1 0 1 0 0 0 0 0
......................................................................GAGCTGGTAAAATGGAACCAAA.............................................................................................................. 22 0 2 0.50 1 0 0 0 1 0 0 0
.......................................................................AGCTGTTAAAATGGAACCAAAT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAAAA............................................................................................................. 22 1 2 0.50 1 0 0 0 0 1 0 0
..............................................................................................................TGGTCCCCTTCAACCAGCTGTAA..................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGGATC.................................................................... 25 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACTAAAT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGGACCAAAT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................AGCTGGCAAAATGGAACCAAAT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
......................................................................GAGCTGGTAAAATGGAACCAA............................................................................................................... 21 0 2 0.50 1 0 0 0 0 1 0 0
.......................................................................ATCTGGTAAAATGGAACCAAAT............................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAGAT............................................................................................................. 22 1 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTAGATC.................................................................. 27 2 2 0.50 1 0 0 1 0 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTGTA...................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCATA.............................................................................................................. 21 1 2 0.50 1 0 1 0 0 0 0 0
......................................................................GAGCTGGTAAAATGGAACCAAAT............................................................................................................. 23 0 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTGAACCAGCTGT....................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAACT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGCTGTAG..................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAAATAT........................................................................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCCAAT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TCGGTCCCCTTCAACCAGCTGT....................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACAAGCTGTATC.................................................................... 25 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCAAATCG........................................................................................................... 24 0 2 0.50 1 0 1 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCA................................................................................................................ 19 0 2 0.50 1 0 1 0 0 0 0 0
.......................................................................AGCTGGTAAAATCGAACCAAAT............................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................AGAGCTGGTAAAATGGAACCA................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGT.......................................................................... 19 1 6 0.33 2 2 0 0 0 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTAT....................................................................... 23 1 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGC.......................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................TTTGGTCCCCTTTAACTAGCTGT....................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTGCATC.................................................................... 26 2 3 0.33 1 0 0 0 0 0 1 0
............................................................................................................TTTGGTCCCCTTCAACCAGCTATC...................................................................... 24 2 3 0.33 1 0 0 1 0 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCAGC.......................................................................... 19 0 3 0.33 1 0 0 0 1 0 0 0
.......................................................................AGCTGGTAAAATTGAACCAAATT............................................................................................................ 23 2 4 0.25 1 1 0 0 0 0 0 0
..............................................................................................................TTGGCCCCTTCAACCAGCTGTATC.................................................................... 24 3 5 0.20 1 0 0 1 0 0 0 0
.......................................................................AGCTTGTAAAATGGAACCAAT.............................................................................................................. 21 2 5 0.20 1 0 0 0 1 0 0 0
.............................................................................................................TTGGTCCCCTTCAACCATC.......................................................................... 19 1 5 0.20 1 0 1 0 0 0 0 0
.....................................................................AGAGCTTGTAAAATGGAACCC................................................................................................................ 21 2 6 0.17 1 1 0 0 0 0 0 0
.......................................................................AGCTGGTAAAATGGAACCATT.............................................................................................................. 21 2 7 0.14 1 1 0 0 0 0 0 0
............................GACGTCGCGGTTCATC.............................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

AGGCGGACCACCTCGACGGAAGGAGTGACTGCAGCGACAAGGAGCCTAGGCCCTCGGTTTACGAAACGATCTCGACCATTTTACCTTGGTTTAGCTGACAGGTTACCTAAACCAGGGGAAGTTGGTCGACATCGACACGTAACTACCGCGGCACGCCGGGCCGACGTCCAGGGCGTCAGTGCCTCTCCTGGGTCGTCCGCCA

********************************************************..(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))....******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis
............................................................................................................AAACCAGGGGAAGTTGGTCGAC........................................................................ 22 0 2 0.50 1 1 0
..............................................................................................................................................CTACCGCGGCGCGCC............................................. 15 1 18 0.06 1 0 1

Generated: 09/01/2015 at 12:06 PM