ID:

mml-mir-1306

 Coordinate:

chr10:65247770-65247827 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.1 -31.0 -31.0
mature

star

  1. mml-mir-1306  chr10:65247810-65247827 +
  2. chr9:111734683-111734700 -

Sense Strand Reads

TGGAGAGCCGAGCTCGCCCCTTCCAAGCGCTGCCCCGTGAGCAGTCTCCACCACCTCCCCTGCAAACGTCCAGTGGTGCAGAGGTAATGGACGTTGGCTCTGGTGGTGATGGACAGTCCGAACTCCCTGCCGAGGACCCCTTCAACTTCTACGGAGCT

***********************************((.((...((((.(((((((......((.((((((((...............)))))))).))...)))))))..))))..))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116840

epididymis		 SRR116845

epididymis		 SRR116839

testes		 SRR116844

epididymis
..........................................................................................ACGTTGGCTCTGGTGGTGATGT.............................................. 22 1 1 59.00 59 27 16 7 6 0 3 0
..........................................................................................ACGTTGGCTCTGGTGGTGAT................................................ 20 0 1 18.00 18 8 3 7 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATG............................................... 21 0 1 14.00 14 10 3 1 0 0 0 0
..................................................CCACCTCCCCTGCAAACGTCCA...................................................................................... 22 0 1 14.00 14 8 2 2 2 0 0 0
..................................................CCACCTCCCCTGCAAACGTCC....................................................................................... 21 0 1 7.00 7 4 0 2 1 0 0 0
..................................................CCACCTCCCCTGCAAACGTCCATC.................................................................................... 24 2 1 6.00 6 0 0 0 0 3 0 3
..................................................CCACCTCCCCTGCAAACGTC........................................................................................ 20 0 1 5.00 5 2 1 0 2 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATTT.............................................. 22 2 1 5.00 5 1 3 0 1 0 0 0
..................................................CCACCTCCCCTGCAAACGTCCAATC................................................................................... 25 2 1 4.00 4 0 0 0 0 3 0 1
..........................................................................................ACGTTGGCTCTGGTGGTGATT............................................... 21 1 1 4.00 4 1 1 0 1 0 1 0
.........................................................................................GACGTTGGCTCTGGTGGTGAT................................................ 21 0 1 3.00 3 1 0 1 1 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATGA.............................................. 22 1 1 3.00 3 0 2 0 0 0 1 0
..........................................................................................ACGTTGGCTCTGGTGGTGATGTA............................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATGTAT............................................ 24 2 1 2.00 2 1 1 0 0 0 0 0
..................................................CCACCTCCCCTGCAAACGTCA....................................................................................... 21 1 1 2.00 2 1 0 0 1 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATGAA............................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTCATGT.............................................. 22 2 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGCTG............................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................AAGACGTTGGCTCTGGTGGTGAT................................................ 23 2 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTTAT................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0
....................................................ACCTCCCCTGCAAACGTCC....................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATAT.............................................. 22 2 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTG.................................................. 18 0 2 1.00 2 2 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATTTA............................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATTA.............................................. 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CCACCTCCCCTGCAAACGTCCAT..................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTTATG............................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGGGATG............................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATTTAT............................................ 24 3 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGTTGG.............................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATGAAA............................................ 24 2 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATGTTT............................................ 24 3 3 0.67 2 1 1 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATAA.............................................. 22 2 3 0.67 2 1 1 0 0 0 0 0
..........................................................................................ACGTTGGCTCTGGTGGTGATTTT............................................. 23 3 4 0.50 2 2 0 0 0 0 0 0
...................................................CACCTCCCCTGCAAACGTCCATC.................................................................................... 23 2 2 0.50 1 0 0 0 0 0 0 1
..................................................CCCCCTCCCCTGCAAACGTCCATC.................................................................................... 24 3 3 0.33 1 0 0 0 0 1 0 0
..................................................CCACCTCCCCTGCAAACGTCATC..................................................................................... 23 3 12 0.25 3 0 0 0 0 2 0 1
..........................................................................................ACGTTGGCTCTGGTGGTTATTT.............................................. 22 3 7 0.14 1 1 0 0 0 0 0 0
...................................................CACCTCCCCTGCAAACGTCATC..................................................................................... 22 3 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

ACCTCTCGGCTCGAGCGGGGAAGGTTCGCGACGGGGCACTCGTCAGAGGTGGTGGAGGGGACGTTTGCAGGTCACCACGTCTCCATTACCTGCAACCGAGACCACCACTACCTGTCAGGCTTGAGGGACGGCTCCTGGGGAAGTTGAAGATGCCTCGA

***********************************((.((...((((.(((((((......((.((((((((...............)))))))).))...)))))))..))))..))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
...........................................................................................................CTACCTGTTAGGCTTGA.................................. 17 1 2 1.50 3 3
...........................................................................................................CTACCTGTTAGGCTTG................................... 16 1 6 0.17 1 1

Generated: 09/01/2015 at 12:06 PM