ID:

mml-mir-1298

 Coordinate:

chrX:113626923-113627032 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TCTTTCCCCTTCATATAGGATGTCTTGAAGCTGAGAACGAAGAGCTGTTGGAGAGACGAGGAGTTAAGAGTTCATTCGGCTGTCCAGATGTATCCAAGTATCCTCTGTTATTTGGCAATAAATACATCTGGGCAACTGACTGAACTTTTCGCTTTTCATGACTCAGCTGGAACCCTCCACAACCAGAAGAGCCTGTTATAAAGTGAAAAG

*******************************************************..(((((((.(((((((((.((((.((((((((((((((((((((........)))))))......))))))))))))).)))).))))))))).)))))))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116839

testes		 SRR116844

epididymis
......................................................................TTCATTCGGCTGTCCAGATGTA...................................................................................................................... 22 0 1 18.00 18 16 1 1 0 0
............................................................................................................................CATCTGGGCAACTGACTGAACT................................................................ 22 0 1 8.00 8 7 0 1 0 0
......................................................................TTCATTCGGCTGTCCAGATGT....................................................................................................................... 21 0 1 6.00 6 5 1 0 0 0
......................................................................TTCATTCGGCTGTCCAGATTTA...................................................................................................................... 22 1 1 4.00 4 2 1 1 0 0
......................................................................TTCATTCGGCTGTCCAGATTTAA..................................................................................................................... 23 2 1 2.00 2 1 0 1 0 0
......................................................................TTCATTCGGCTGTCCAGATGTAT..................................................................................................................... 23 0 1 2.00 2 1 0 0 1 0
............................................................................................................................CATCTGGGCAACTGACTGA................................................................... 19 0 1 2.00 2 2 0 0 0 0
......................................................................TTCATTCGGCTGTCCAGATGTAA..................................................................................................................... 23 1 1 2.00 2 1 1 0 0 0
............................................................................................................................CATCTGGGCAACTGACTGAAA................................................................. 21 1 1 2.00 2 2 0 0 0 0
.......................................................................TCATTCGGCTGTCCAGATGTAA..................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..........................................................................................................................TACATCTGGGCAACTGACTGAACAA............................................................... 25 2 1 1.00 1 1 0 0 0 0
......................................................................TTCATTCGGCTGTCCATATGAA...................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
..........................................................................................................................TACATCTGGGCAACTGACTGA................................................................... 21 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................AAATACATCTGGGCAACTGACTGA................................................................... 24 0 1 1.00 1 1 0 0 0 0
............................................................................................................................CATCTGGGCAACTGACTGAACTA............................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................TTCATTCGGCTGTCCCGATGTA...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................................................................GGCAATAAATACATCTGGGCAACT......................................................................... 24 0 1 1.00 1 1 0 0 0 0
.......................................................................TCATTCGGCTGTCCAGATGTAT..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
............................................................................................................................CATCTGGGCAACTGACTGAACAA............................................................... 23 2 1 1.00 1 1 0 0 0 0
......................................................................TTCATTCGGCTGTCCAGATT........................................................................................................................ 20 1 1 1.00 1 0 0 1 0 0
......................................................................TTCATTCGGCTGTCCAGATTTATC.................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
......................................................................TTCATTCGGCTGTCCAGATTTAT..................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................ATACATCTGGGCAACTGACTTA................................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................TAAGAGTTCGTTCGACTATC.............................................................................................................................. 20 3 18 0.06 1 0 0 0 0 1

Anti-sense strand reads

AGAAAGGGGAAGTATATCCTACAGAACTTCGACTCTTGCTTCTCGACAACCTCTCTGCTCCTCAATTCTCAAGTAAGCCGACAGGTCTACATAGGTTCATAGGAGACAATAAACCGTTATTTATGTAGACCCGTTGACTGACTTGAAAAGCGAAAAGTACTGAGTCGACCTTGGGAGGTGTTGGTCTTCTCGGACAATATTTCACTTTTC

*************************************************..(((((((.(((((((((.((((.((((((((((((((((((((........)))))))......))))))))))))).)))).))))))))).)))))))....******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116844

epididymis
...........................................................................AGCCGACAGGTCTACATAGGTT................................................................................................................. 22 0 1 9.00 9 8 1 0
..........................................................................AAGCCGACAGGTCTACATAGGTT................................................................................................................. 23 0 1 7.00 7 6 1 0
..........................................................................AAGCCGACAGGTCTACATAGGT.................................................................................................................. 22 0 1 2.00 2 2 0 0
...........................................................................TGCCGACAGGTCTACATAGGTT................................................................................................................. 22 1 1 1.00 1 1 0 0
............................................................................GACGACAGGTCTACATAGGTT................................................................................................................. 21 1 1 1.00 1 1 0 0
.............................................................................CCGACAGGTCTACATAGGTT................................................................................................................. 20 0 1 1.00 1 1 0 0
..........................................................................AAGCCGACAGGTCTACATAGGTTC................................................................................................................ 24 0 1 1.00 1 1 0 0
...........................................................................AGCCGACAGTTCTACATAGGTT................................................................................................................. 22 1 1 1.00 1 1 0 0
..........................................................................TAGCCGACAGGTCTACATAGGTT................................................................................................................. 23 1 1 1.00 1 1 0 0
.........................................................................AAAGCCGACAGGTCTACATAGGT.................................................................................................................. 23 1 1 1.00 1 1 0 0
..............................................................CAAGTCTCAAGTAGGCCG.................................................................................................................................. 18 2 20 0.05 1 0 0 1
..............................................................CAAGTCTCAAGTAAGC.................................................................................................................................... 16 1 20 0.05 1 0 0 1

Generated: 09/01/2015 at 12:34 PM