ID:

mml-mir-1260b

 Coordinate:

chr14:97339654-97339761 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-63.7 -63.6 -63.6

Sense Strand Reads

GCTTACCGCAATCAGGGCTGAGTTCCTCTGGTCCCCTGGGGTTGAAGCAGGTGGCTGCTGCTCTCCGTTTATCCCACCACTGCCACCATTATTGCTACTGTTCAGCAGGTGCTGCTGGTGGTGATGGTGATAGTCTGGTGGGGGCGGTGGGGCTGCTGTTGCTGCTGCTTGGGAGGCCGCAGGAGGGGCAGCAGGGGGCGGTGGAGGG

***********************************((.((((...(((((.((((.((.(((((((((...(((((((((((.((((((((((((.......((((((...)))))))))))))))))).))))..))))))))))).))))).)).))))))))))))).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle		 SRR116845

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116843

cortex		 SRR116839

testes
......................................................................ATCCCACCGCTGCCACCATT...................................................................................................................... 20 1 1 7.00 7 3 0 2 0 1 1 0
......................................................................ATCCCACCGCTGCCACCA........................................................................................................................ 18 1 20 6.40 128 60 0 39 0 25 4 0
......................................................................ATCCCACCGCTGCCACCATTATC................................................................................................................... 23 2 2 4.00 8 0 5 0 3 0 0 0
......................................................................ATCCCACCGCTGCCACCAT....................................................................................................................... 19 1 2 3.00 6 4 0 0 0 0 1 1
......................................................................ATCCCACCGCTGCCACCATTAATC.................................................................................................................. 24 3 1 3.00 3 0 2 0 1 0 0 0
......................................................................ATCCCACCGCTGCCACCATC...................................................................................................................... 20 2 20 1.30 26 0 15 0 11 0 0 0
......................................................................ATCCCACCACTGCCACCAT....................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................ATCCCACCACTGCCACCATTATC................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
......................................................................ATCCCACCGCTGCCACCAATATC................................................................................................................... 23 3 11 0.73 8 0 5 0 3 0 0 0
......................................................................ATCCCACCGCTGCCACCATAAT.................................................................................................................... 22 2 3 0.67 2 1 1 0 0 0 0 0
......................................................................ATCCCACCACTGCCACCA........................................................................................................................ 18 0 5 0.60 3 1 0 1 0 1 0 0
......................................................................ATCCCACCGCTGCCACC......................................................................................................................... 17 1 20 0.50 10 7 0 3 0 0 0 0
.......................................................................TCCCACCGCTGCCACCATTAATTC................................................................................................................. 24 3 2 0.50 1 0 1 0 0 0 0 0
......................................................................ATCCCACCGCTGCCACCATAATC................................................................................................................... 23 3 7 0.43 3 0 0 0 3 0 0 0
......................................................................ATCCCACCACTGCCACCATAATC................................................................................................................... 23 2 3 0.33 1 0 0 0 1 0 0 0
......................................................................ATCCCACCGCTGCCACCATTAA.................................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0
.....................................................................TATCCCACCGCTGCCACCA........................................................................................................................ 19 1 7 0.29 2 1 0 0 0 1 0 0
......................................................................ATCCCACCACTGCCACCAATC..................................................................................................................... 21 2 15 0.27 4 0 2 0 2 0 0 0
.......................................................................TCCCACCGCTGCCACCATT...................................................................................................................... 19 1 4 0.25 1 1 0 0 0 0 0 0
......................................................................ATCCCACCGCTGCCACCATTC..................................................................................................................... 21 2 7 0.14 1 0 1 0 0 0 0 0
......................................................................ATCCCACCGCTGCCACCATA...................................................................................................................... 20 2 18 0.11 2 0 0 1 0 0 1 0
.......................................................................TCCCACCGCTGCCACCAT....................................................................................................................... 18 1 20 0.05 1 0 0 0 0 1 0 0
......................................................................ATCCGACCGCTGCCACCA........................................................................................................................ 18 2 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

CGAATGGCGTTAGTCCCGACTCAAGGAGACCAGGGGACCCCAACTTCGTCCACCGACGACGAGAGGCAAATAGGGTGGTGACGGTGGTAATAACGATGACAAGTCGTCCACGACGACCACCACTACCACTATCAGACCACCCCCGCCACCCCGACGACAACGACGACGAACCCTCCGGCGTCCTCCCCGTCGTCCCCCGCCACCTCCC

***********************************((.((((...(((((.((((.((.(((((((((...(((((((((((.((((((((((((.......((((((...)))))))))))))))))).))))..))))))))))).))))).)).))))))))))))).))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:10 PM