ID:

mml-mir-1255b

 Coordinate:

chr1:198406526-198406637 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-66.4 -66.2 -65.9 -65.7
mature

  1. mml-mir-1255b  chr1:198406546-198406567 +
  2. chr5:144557513-144557534 -
star

Sense Strand Reads

AGTACTCTATAATAGATCCTTTGTTGTCATTTCAGCGATGTTCACAGCATCTTCACTAGGAGTTGCTTCTTACGGATAAGCAAAGAAAGTGGTTTGAGCCTCAGGAAACCACTTTCTTTGCTCATCTGTAAGGAGCAACTCCTTATCTGTTCAAGTTTTATCATGAGATTGCAACAATTCAGTCACACCTTTAGTCTGTACTTCTAATTCTA

***********************************...((......(((((((....((((((((((((((((((((.(((((((((((((((((..........))))))))))))))))).)))))))))))))))))))).....................))))).))..)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle		 SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116839

testes
......................................................................TACGGATAAGCAAAGAAAGTGG........................................................................................................................ 22 0 2 12.00 24 13 3 6 2 0
........................................................................CGGATAAGCAAAGAAAGTGGTT...................................................................................................................... 22 0 2 9.00 18 3 7 2 5 1
......................................................................TACGGATAAGCAAAGAAAGTGGT....................................................................................................................... 23 0 2 7.00 14 4 2 5 2 1
......................................................................TACGGATAAGCAAAGAAAGTGGA....................................................................................................................... 23 1 3 2.67 8 4 1 1 1 1
......................................................................TACGGATAAGCAAAGAAAGTG......................................................................................................................... 21 0 3 2.00 6 0 3 1 2 0
........................................................................CGGATAAGCAAAGAAAGTGGT....................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0
......................................................................TACGGATAAGCAAAGAAAGTGGTAA..................................................................................................................... 25 2 2 0.50 1 1 0 0 0 0
......................................................................TACGGATAAGCAAAGAAAGTGGTTT..................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0
........................................................................CGGATAAGCAAAGAAAGTGGTA...................................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
.......................................................................ACGGATAAGCAAAGAAAGTGGT....................................................................................................................... 22 0 2 0.50 1 0 0 0 1 0
........................................................................CGGATAAGCAAAGAAAGTGGTTT..................................................................................................................... 23 0 2 0.50 1 0 0 0 1 0
......................................................................TACGGATAAGCAAAGGAAGTGG........................................................................................................................ 22 1 3 0.33 1 0 0 0 1 0
........................................................................CGGCTAAGCAAAGAAAGTGGTT...................................................................................................................... 22 1 3 0.33 1 0 0 0 1 0
......................................................................TACGGATAAGCAAAGAAAG........................................................................................................................... 19 0 3 0.33 1 0 0 1 0 0
......................................................................TACGGATAAGCAAAGAAA............................................................................................................................ 18 0 4 0.25 1 0 0 0 1 0
......................................................................TACGGATAAGCAAAGAAAGTGT........................................................................................................................ 22 1 5 0.20 1 0 0 1 0 0
........................................................................CGGATAAGCAAAGAAAGTGGTTTT.................................................................................................................... 24 1 6 0.17 1 1 0 0 0 0
........................................................................CGGATAAGCAAAGTGAGTGGTT...................................................................................................................... 22 2 6 0.17 1 0 0 0 1 0
........................................................................CGGATCAGCAAAGAAAGTGGTTA..................................................................................................................... 23 2 19 0.05 1 0 0 0 0 1

Anti-sense strand reads

TCATGAGATATTATCTAGGAAACAACAGTAAAGTCGCTACAAGTGTCGTAGAAGTGATCCTCAACGAAGAATGCCTATTCGTTTCTTTCACCAAACTCGGAGTCCTTTGGTGAAAGAAACGAGTAGACATTCCTCGTTGAGGAATAGACAAGTTCAAAATAGTACTCTAACGTTGTTAAGTCAGTGTGGAAATCAGACATGAAGATTAAGAT

***********************************...((......(((((((....((((((((((((((((((((.(((((((((((((((((..........))))))))))))))))).)))))))))))))))))))).....................))))).))..)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:06 PM