ID:

mml-mir-1243

 Coordinate:

chr5:107277249-107277359 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.3 -27.9 -27.7

Sense Strand Reads

GATGCTTATTCTAACAAATTTTCTTCACAATATTTCATAGGTGTGCCAAGCTGACAGATTGGTTGACTGTGTACTCTTATATTTTATTCCTGTAACTGGGCCAGTTTCTGCCCTTAACTAAAACTGGATCAATTATAGGAGTGAAATAAAAGTCCATCTCCTGCCTATTTATTACTCTGCTTTGGTAATAAATCTATTTTTAAAAGAACCT

************************************************************************...(((.((((((((((((((((.((..(((((((.............)))))))..)).)))))))))))))))).))).....****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis
........................................................................................................................AAACTGGATCAATTATAGGAGT..................................................................... 22 0 1 7.00 7 7 0
.......................................................................................TCCTGTAACTGGGCCAGTTTCT...................................................................................................... 22 0 1 2.00 2 2 0
.........................................................................................................................AACTGGATCAATTATAGGAGT..................................................................... 21 0 1 2.00 2 2 0
.....................................................................................ATTCCTGTAACTGGGCCAGTTT........................................................................................................ 22 0 1 1.00 1 1 0
.........................................................................................................................AACTGGATCAATTATAGGAGTATC.................................................................. 24 3 1 1.00 1 0 1
.........................................................................................................................AACTGGATCAATTATAGGAGAA.................................................................... 22 2 1 1.00 1 1 0
.........................................................................................................................AACTGGATCAATTATAGGAGTGA................................................................... 23 0 1 1.00 1 1 0
.........................................................................................................................AACTGGATCAATTATAGGAGTA.................................................................... 22 1 1 1.00 1 1 0
........................................................................................................................AAACTGGATCAATTATAGGAGTATC.................................................................. 25 3 1 1.00 1 0 1
..........................................................................................................................ACTGGATCAATTATAGGAGTGT................................................................... 22 1 1 1.00 1 1 0
.........................................................................................................................AACTGGCTCAATTATAGGAGT..................................................................... 21 1 2 0.50 1 1 0

Anti-sense strand reads

CTACGAATAAGATTGTTTAAAAGAAGTGTTATAAAGTATCCACACGGTTCGACTGTCTAACCAACTGACACATGAGAATATAAAATAAGGACATTGACCCGGTCAAAGACGGGAATTGATTTTGACCTAGTTAATATCCTCACTTTATTTTCAGGTAGAGGACGGATAAATAATGAGACGAAACCATTATTTAGATAAAAATTTTCTTGGA

******************************************************...(((.((((((((((((((((.((..(((((((.............)))))))..)).)))))))))))))))).))).....************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:24 PM