ID:

mml-mir-1232

Coordinate:

chr15:1246142-1246214 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TCACTGCCACGGTGGCCACCTTCCTGCTACAGCTCTTCGAGCACGACAAGGTGGGGTGGCGGCGACATGGCGGGGGCGGCGGGCCCTGCGGAGGCTGTGCGCCTGACCCCGACCACCCCGCAGGACCTGAAGGTTGTCAACAGTTACCTGAAAAGCTGCTTCCTCATTTTCCC

***********************************...((..........((((((((((((......((((((.((.((.((((.......)))))))).)))).))))).)))))))))...............))***********************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
SRR116845

epididymis
.....................................................................................................CCTGACCCCGACCACCCCGCAGAATC.............................................. 26 2 1 2.00 2 0 2
.....................................................................................................CCTGACCCCGACCACCCCGCAGT................................................. 23 1 1 1.00 1 1 0
......................................................................................................CTGACCCCGACCACCCCGCAGA................................................. 22 1 1 1.00 1 1 0
.....................................................................................................CCTGACCCCGACCACCCCGCAGA................................................. 23 1 1 1.00 1 1 0
......................................................................................................CTGACCCCGACCACCCCGCAGT................................................. 22 1 1 1.00 1 1 0
......................................................................................................CTGACCCCGACCACCCCGCAGAA................................................ 23 1 1 1.00 1 1 0

Anti-sense strand reads

AGTGACGGTGCCACCGGTGGAAGGACGATGTCGAGAAGCTCGTGCTGTTCCACCCCACCGCCGCTGTACCGCCCCCGCCGCCCGGGACGCCTCCGACACGCGGACTGGGGCTGGTGGGGCGTCCTGGACTTCCAACAGTTGTCAATGGACTTTTCGACGAAGGAGTAAAAGGG

***********************************...((..........((((((((((((......((((((.((.((.((((.......)))))))).)))).))))).)))))))))...............))***********************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
............ACCGGTGGCAGGACGATG............................................................................................................................................... 18 1 6 0.17 1 1

Generated: 09/01/2015 at 12:10 PM