ID:

mml-mir-105-1

 Coordinate:

chrX:152013334-152013414 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.4 -43.2 -43.2
mature

  1. mml-mir-105-1  chrX:152013344-152013366 -
  2. chrX:152015533-152015555 -
star

  1. mml-mir-105-1  chrX:152013379-152013399 -
  2. chrX:152015568-152015588 -

Sense Strand Reads

CAGTATCTACTCCTATATATTGGATGTCAGCTTCTGTTGCAGAACCTGAGTGTGCATCGTGGTCAAATGCTCAGACTCCTGTGGTGGCTGCTCATGCACCACGGATGTTTGAGCATGTGCTACGGTGTCTACTTTTGCTACATTGCCGTCTGCTTCTGGACCAAAGTCATTTATTCCTGTG

**************************************************...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))........********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116845

epididymis		 SRR116844

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle
..................................................................................................CCACGGATGTTTGAGCATGTGT............................................................. 22 1 2 40.00 80 70 8 0 0 2 0
................................................................AAATGCTCAGACTCCTGTGGTGT.............................................................................................. 23 1 2 17.00 34 30 4 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCATGTGCT............................................................ 23 0 2 8.50 17 14 2 0 0 0 1
..................................................................................................CCACGGATGTTTGAGCATGTGC............................................................. 22 0 2 5.50 11 9 1 0 0 0 1
.................................................................AATGCTCAGACTCCTGTGGTG............................................................................................... 21 0 2 5.00 10 9 1 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGGTGA.............................................................................................. 23 1 2 4.50 9 9 0 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGTGGT................................................................................................ 23 0 2 4.00 8 8 0 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGGTG............................................................................................... 22 0 2 3.50 7 7 0 0 0 0 0
....................................................................................................ACGGATGTTTGAGCATGTGCTT........................................................... 22 1 2 3.00 6 6 0 0 0 0 0
....................................................................................................ACGGATGTTTGAGCATGTGCT............................................................ 21 0 2 2.50 5 4 1 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGTGGTATC............................................................................................. 26 2 2 2.50 5 0 0 3 2 0 0
..............................................................TCAAATGCTCAGACTCCTGTGGATC.............................................................................................. 25 3 3 2.00 6 0 0 4 2 0 0
..................................................................................................CCACGGATGTTTGAGCATGTTT............................................................. 22 2 3 1.33 4 4 0 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCATTTGT............................................................. 22 2 3 1.00 3 2 1 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGTGG................................................................................................. 22 0 2 1.00 2 2 0 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGGTGTA............................................................................................. 24 2 2 1.00 2 2 0 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGTGGTG............................................................................................... 24 0 2 1.00 2 1 1 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGGTAT.............................................................................................. 23 2 2 1.00 2 2 0 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCATGTGCTT........................................................... 24 1 2 1.00 2 2 0 0 0 0 0
.................................................................AATGCTCAGACTCCTGTGGTGTA............................................................................................. 23 2 2 1.00 2 2 0 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGGTTT.............................................................................................. 23 2 3 0.67 2 1 1 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCATTTGCT............................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..............................................................TCAAATGCTCATACTCCTGTGGTATC............................................................................................. 26 3 2 0.50 1 0 0 1 0 0 0
................................................................AAATGCTCAGACTCCTGTG.................................................................................................. 19 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTAGAGCATGTGT............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGTTG............................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0
....................................................................................................ACGGATGTTTGAGCATGTGCTTA.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0
................................................................AAATGCTCAGACTCCTTTGTTG............................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
....................................................................................................ACGGATGTTTGAGCATTTGCTT........................................................... 22 2 2 0.50 1 1 0 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGG................................................................................................. 20 0 2 0.50 1 1 0 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGT................................................................................................... 20 0 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATATTTGAGCATGTGT............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGTGGTA............................................................................................... 24 1 2 0.50 1 1 0 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGTGGA................................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTG.................................................................................................... 19 0 2 0.50 1 1 0 0 0 0 0
....................................................................................................ACGTATGTTTGAGCATGTGCTA........................................................... 22 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTTAGCATGTGCT............................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..............................................................TCAAATGCTCAGACTCCTGTTG................................................................................................. 22 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCATGTGA............................................................. 22 1 2 0.50 1 0 1 0 0 0 0
..................................................................................................CCACGGATGTTTGATCATGTGC............................................................. 22 1 2 0.50 1 1 0 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGGTGAT............................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTTAGCATGTGT............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCATGTGTAA........................................................... 24 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCCTGTGT............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
..............................................................TCAAATGCTTAGACTCCTGTGGT................................................................................................ 23 1 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCACGTGT............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
................................................................AAATGCTCAGACTCCTGTGGTGTT............................................................................................. 24 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTGAGCATTTGC............................................................. 22 1 2 0.50 1 0 1 0 0 0 0
..............................................................TCAAATGCTTAGACTCCTGTGGTAA.............................................................................................. 25 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................CCACGGCTGTTTGAGCCTGTGT............................................................. 22 3 12 0.08 1 1 0 0 0 0 0
..................................................................................................CCACGGATGTTTTAGCATGTTT............................................................. 22 3 12 0.08 1 1 0 0 0 0 0

Anti-sense strand reads

GTCATAGATGAGGATATATAACCTACAGTCGAAGACAACGTCTTGGACTCACACGTAGCACCAGTTTACGAGTCTGAGGACACCACCGACGAGTACGTGGTGCCTACAAACTCGTACACGATGCCACAGATGAAAACGATGTAACGGCAGACGAAGACCTGGTTTCAGTAAATAAGGACAC

*********************************************...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:38 PM