ID:

ocu_6

 Coordinate:

chrUn0002:10694865-10694944 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.7 -40.1 -40.1

Sense Strand Reads

TAAGAGAATATGGGGTGGGGATTGGATAGAATTGCCATCTTGAGCCATGTTGTGTGCAGTACTCCACTTCAAGAGGTGCCACTCATGTGTATGTGATATGATTGGCATCTCTTAGAGGGATGTAATGTACAACAGGTACAACCTCAGAGCTTTCTCTGAGAAAAGGAGTGTGATTATATC
*************************************************(((((((((.((((((.(((.(((((((((((.((((((.......)))))).))))))))))).)))))).))).))))).)))).******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
....................................................................................................ATTGGCATCTCTTAGAGGGAT........................................................... 21 0 1 1088.00 1088 1078 10
..................................................................................................TGATTGGCATCTCTTAGAGGGAT........................................................... 23 0 1 312.00 312 309 3
..................................................................................................TGATTGGCATCTCTTAGAGGGA............................................................ 22 0 1 137.00 137 128 9
....................................................................................................ATTGGCATCTCTTAGAGGGA............................................................ 20 0 1 126.00 126 63 63
....................................................................................................ATTGGCATCTCTTAGAGGG............................................................. 19 0 1 80.00 80 2 78
................................................................CACTTCAAGAGGTGCCAATCAT.............................................................................................. 22 1 1 70.00 70 70 0
..................................................................................................TGATTGGCATCTCTTAGAGGG............................................................. 21 0 1 70.00 70 13 57
....................................................................................................ATTGGCATCTCTTAGAGGGATT.......................................................... 22 1 1 69.00 69 61 8
...................................................................................................GATTGGCATCTCTTAGAGGGAT........................................................... 22 0 1 40.00 40 40 0
.................................................................................................ATGATTGGCATCTCTTAGAGGGAT........................................................... 24 0 1 31.00 31 31 0
...................................................................................................AATTGGCATCTCTTAGAGGGAT........................................................... 22 1 1 24.00 24 24 0
................................................................CACTTCAAGAGGTGCCAAT................................................................................................. 19 1 1 18.00 18 18 0
....................................................................................................ATTGGCATCTCTTGGAGGGAT........................................................... 21 1 1 15.00 15 15 0
................................................................CACTTCAAGAGGTGCCACTCAT.............................................................................................. 22 0 1 12.00 12 12 0
..................................................................................................TGATTGGCATCTCTTAGAGG.............................................................. 20 0 1 12.00 12 0 12
.....................................................................................................TTGGCATCTCTTAGAGGGAT........................................................... 20 0 1 11.00 11 10 1
...................................................................................................GATTGGCATCTCTTAGAGGGA............................................................ 21 0 1 11.00 11 9 2
..................................................................................................TGATTGGCATCTCTTAGAGGGATT.......................................................... 24 1 1 6.00 6 6 0
....................................................................................................ACTGGCATCTCTTAGAGGGAT........................................................... 21 1 1 6.00 6 6 0
.................................................................................................ATGATTGGCATCTCTTAGAGGGA............................................................ 23 0 1 5.00 5 2 3
..................................................................................................TGATTGGCATCTCTTAGAG............................................................... 19 0 1 5.00 5 4 1
................................................................CACTTCAAGAGGTGCCAATC................................................................................................ 20 1 1 5.00 5 2 3
....................................................................................................ATTGGCATCTCTTAGAGGGATA.......................................................... 22 1 1 4.00 4 0 4
...................................................................................................GATTGGCATCTCTTAGAGGG............................................................. 20 0 1 4.00 4 1 3
.................................................................ACTTCAAGAGGTGCCAATCAT.............................................................................................. 21 1 1 4.00 4 4 0
..................................................................................................TGATTGGCATCTCTTAGAGGGT............................................................ 22 1 1 3.00 3 1 2
....................................................................................................ATTGGCATCTCTTAGAGGGCT........................................................... 21 1 1 3.00 3 2 1
....................................................................................................ATTGGCATCTCTTAGAGGGATG.......................................................... 22 0 1 3.00 3 3 0
....................................................................................................ATTGGCATCTCTTAGAGGGAA........................................................... 21 1 1 3.00 3 3 0
...................................................................................................AATTGGCATCTCTTAGAGGGATAT......................................................... 24 2 1 3.00 3 3 0
....................................................................................................ATTGGCATCTCTTAGAGG.............................................................. 18 0 2 2.50 5 0 5
.................................................................................................ATGATTGGCATCTCTTAGAGGG............................................................. 22 0 1 2.00 2 0 2
........................................................................................................GCATCTCTTAGAGGGA............................................................ 16 0 1 2.00 2 2 0
......................................................................................................TGGCATCTCTTAGAGGGA............................................................ 18 0 1 2.00 2 2 0
....................................................................................................ATTGGCATCTCTTATAGGGAT........................................................... 21 1 1 2.00 2 2 0
..................................................................................................AAATTGGCATCTCTTAGAGGGATT.......................................................... 24 3 2 2.00 4 4 0
..........................................................................................................ATCTCTTAGAGGGAT........................................................... 15 0 3 2.00 6 6 0
....................................................................................................ATTGGCATCTCTTGGAGGG............................................................. 19 1 1 2.00 2 0 2
....................................................................................................ATTGGCATCTCTTAGAGGGATTT......................................................... 23 1 1 2.00 2 0 2
................................................................CACTTCAAGAGGTGCCACTCATGTGT.......................................................................................... 26 0 1 2.00 2 2 0
....................................................................................................ATTGGCATCTCTTAGAG............................................................... 17 0 2 1.50 3 3 0
....................................................................................................ACTGGCATCTCTTGGAGGGAT........................................................... 21 2 5 1.20 6 6 0
....................................................................................................ATTGCCATCTCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
..................................................................................................TGATTGGCATCTCTTAGAGGGC............................................................ 22 1 1 1.00 1 1 0
....................................................................................................ATTGGCATCGCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
............................................................................................CTGCTTTGATTGGCATCTCTTAGAGGGAT........................................................... 29 3 1 1.00 1 1 0
.............................................................................................CAAAATGATTGGCATCTCTTAGAGGGAT........................................................... 28 3 1 1.00 1 1 0
......................................................................................................TGGCATCTCTTAGAGGGATTTGAT...................................................... 24 2 1 1.00 1 1 0
..................................................................................................TGATTGGCATCTCTTGGAGGGA............................................................ 22 1 1 1.00 1 1 0
..............................................................................................GTGATGATTGGCATCTCTTAGAG............................................................... 23 2 1 1.00 1 1 0
....................................................................................................ATTGGCATCTCTTGGCGGGAT........................................................... 21 2 1 1.00 1 1 0
....................................................................................................ATTGGCATCTCTTAGAGCGAT........................................................... 21 1 1 1.00 1 1 0
....................................................................................................ATAGGCATCTCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
.....................................................................................................TTGGCATCTCTTAGAGGGATT.......................................................... 21 1 1 1.00 1 1 0
..................................................................................................TGATTCGCATCTCTTAGAGGGAT........................................................... 23 1 1 1.00 1 1 0
...................................................................................................AATTGGCATCTCTTAGAGGGATT.......................................................... 23 2 1 1.00 1 0 1
.......................................................................................................GGCATCTCTTAGAGGGATT.......................................................... 19 1 2 1.00 2 2 0
....................................................................................................ATTGGCATCTCCTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
......................................................................................................TGGCATCTCTTAGAGGGAT........................................................... 19 0 1 1.00 1 1 0
....................................................................................................ATTGGCGTCTCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
..................................................................................................TGATTGGCATCTCTTAGAGGAAT........................................................... 23 1 1 1.00 1 1 0
........................................................................................................GCATCTCTTAGAGGGAT........................................................... 17 0 1 1.00 1 1 0
.................................................................................................ATGATTGGCATCTCTTCGAGGGAT........................................................... 24 1 1 1.00 1 1 0
..................................................................................................AAATTGGCATCTCTTAGAGGGAT........................................................... 23 2 1 1.00 1 1 0
..................................................................................................TGATTGGCATCTCTTAGAGGGACTAA........................................................ 26 3 1 1.00 1 0 1
................................................................CACTTCAAGAGGTGCCA................................................................................................... 17 0 1 1.00 1 0 1
..................................................................................................TGACTGGCATCTCTTAGAGGGAT........................................................... 23 1 1 1.00 1 1 0
....................................................................................................TTTGGCATCTCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
....................................................................................................ATTAGCATCTCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
..................................................................................................GGATTGGCATCTCTTAGAGGGAT........................................................... 23 1 1 1.00 1 1 0
....................................................................................................ATTGGCATCTCTTAGAGGGT............................................................ 20 1 1 1.00 1 0 1
....................................................................................................ATTGGCATCTCTTAGAGGGATTA......................................................... 23 2 1 1.00 1 0 1
....................................................................................................ATTGGCATCTCTTGGAGGGA............................................................ 20 1 1 1.00 1 1 0
..................................................................................................TGATCGGCATCTCTTAGAGG.............................................................. 20 1 1 1.00 1 1 0
....................................................................................................ATTGGCATCTCTTAGAGGGATAT......................................................... 23 1 1 1.00 1 1 0
....................................................................................................ATTGGCATCTCTTAGAGGGTT........................................................... 21 1 1 1.00 1 1 0
..................................................................................................TGATTGGCATCTCTTATAGGGAT........................................................... 23 1 1 1.00 1 1 0
.....................................................................................................TTGGCATCTCTTAGAGGG............................................................. 18 0 1 1.00 1 0 1
......................................................................................................TGGCATCTCTTAGAGGG............................................................. 17 0 1 1.00 1 1 0
.............................................................................................TGATATGATTGGCATCTCTTAGAGGGAT........................................................... 28 0 1 1.00 1 1 0
.................................................................................................ATGATTGGCATCTCTTAGAGGGT............................................................ 23 1 1 1.00 1 1 0
.........................................................................................................CATCTCTTAGAGGGAT........................................................... 16 0 1 1.00 1 1 0
..................................................................................................TGATTGGCATCCCTTAGAGGG............................................................. 21 1 1 1.00 1 0 1
....................................................................................................ATTGGCCTCTCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
.............................................................................................GCAGATGATTGGCATCTCTTAGAGGG............................................................. 26 3 1 1.00 1 0 1
..................................................................................................GGATTGGCAGCTCTTAGAGGGAT........................................................... 23 2 1 1.00 1 1 0
..................................................................................................TGATTGGCATCTCTTAGAGGGAA........................................................... 23 1 1 1.00 1 1 0
....................................................................................................ATTGGCACCTCTTAGAGGGAT........................................................... 21 1 1 1.00 1 1 0
..................................................................................................TGATTGGCATCTCTTAGAGGGAC........................................................... 23 1 1 1.00 1 1 0
................................................................CACTTCAAGAGGTGCCACT................................................................................................. 19 0 1 1.00 1 1 0
...................................................................................................GATTCGCATCTCTTAGAGGGA............................................................ 21 1 1 1.00 1 1 0
..................................................................................................GGATTGGCATCTCTTAGAGGGA............................................................ 22 1 1 1.00 1 0 1
....................................................................................................ATTGGCATCTCTTAGCGGGAT........................................................... 21 1 1 1.00 1 1 0
...................................................................................................AATTGGCATCTCTTAGAGGGA............................................................ 21 1 2 1.00 2 2 0
..................................................................................................TGATTGGAATCTCTTAGAGGG............................................................. 21 1 1 1.00 1 0 1
.........................................................................................................CATCTCTTAGAGGGA............................................................ 15 0 3 0.67 2 0 2
...................................................................................................AATTGGCATCTCTTGGAGGGA............................................................ 21 2 3 0.67 2 2 0
.................................................................................................TGTATTGGCATCTCTTAGAGGGA............................................................ 23 3 2 0.50 1 0 1
.....................................................................................................TTGGCATCTCTTGGAGGGA............................................................ 19 1 2 0.50 1 1 0
..................................................................................................TGATTGGCATCTCTTAGA................................................................ 18 0 2 0.50 1 0 1
....................................................................................................ATTGGCATCTCTTAGAGGGTTT.......................................................... 22 2 2 0.50 1 1 0
....................................................................................................ATTGGCCTCTCTTAGAGGGATT.......................................................... 22 2 2 0.50 1 1 0
....................................................................................................ATTGGCATCTCTTAGAGGGAG........................................................... 21 1 2 0.50 1 1 0
...................................................................................................AAGTGGCATCTCTTAGAGGGAT........................................................... 22 2 2 0.50 1 1 0
....................................................................................................ATTGGCATCTCTTAGAGGGAC........................................................... 21 1 2 0.50 1 1 0
....................................................................................................ATTGGCATCTTTTAGAGGG............................................................. 19 1 3 0.33 1 0 1
....................................................................................................ATTGGCATCTCTTGAAGGGAT........................................................... 21 2 3 0.33 1 1 0
................................................................CACTTCAAGAGGGGCCAATC................................................................................................ 20 2 4 0.25 1 0 1
.................................................................................................ATGATGGGGATCTCTTAGAGGGT............................................................ 23 3 4 0.25 1 1 0
...................................................................................................AATTGGCATCTCTTAGAGG.............................................................. 19 1 5 0.20 1 0 1
....................................................................................................ATTGGCATCTCTTAGAAG.............................................................. 18 1 8 0.13 1 0 1
......................................................................................................TGGCATCTCTTAGAGGGATTGAT....................................................... 23 3 8 0.13 1 1 0
................................................................CAATTCAAGAGGTGCCAAT................................................................................................. 19 2 20 0.05 1 1 0

Anti-sense strand reads

ATTCTCTTATACCCCACCCCTAACCTATCTTAACGGTAGAACTCGGTACAACACACGTCATGAGGTGAAGTTCTCCACGGTGAGTACACATACACTATACTAACCGTAGAGAATCTCCCTACATTACATGTTGTCCATGTTGGAGTCTCGAAAGAGACTCTTTTCCTCACACTAATATAG
********************************************(((((((((.((((((.(((.(((((((((((.((((((.......)))))).))))))))))).)))))).))).))))).)))).************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:26 AM