ID:

ocu_5

 Coordinate:

chrUn0002:10707165-10707240 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.9 -28.5 -28.3

Sense Strand Reads

TGATTGGGGAGCATGTGCGAAGGGCTGCCACGTTTTGCTTTATTTTGTGCAGTGCTCCACTCCAAAGGGCGCCATTCAGGTACACCAAATTATGATTGGCACTTTTTTGAGTGTGGTAATTCACAACATGTACAACTACATATGTCAGCCCTGGAGAAAGGCGATGTGAACACAGA
******************************************..(((((...((((.(((((.((((((.((((.(((..............))).)))).)))))).))))).))))...))))).************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..............................................................................................ATTGGCACTTTTTTGAGTGTGT............................................................ 22 1 1 2163.00 2163 2161 2
..............................................................................................ATTGGCACTTTTTTGAGT................................................................ 18 0 1 576.00 576 571 5
..............................................................................................ATTGGCACTTTTTTGAG................................................................. 17 0 1 543.00 543 543 0
..............................................................................................ATTGGCACTTTTTTGAGTGT.............................................................. 20 0 1 257.00 257 141 116
..............................................................................................ATTGGCACTTTTTTGAGTGTGA............................................................ 22 1 1 170.00 170 169 1
...............................................................................................TTGGCACTTTTTTGAGTGTGT............................................................ 21 1 1 86.00 86 86 0
...............................................................................................TTGGCACTTTTTTGAGTGTGTT........................................................... 22 1 1 68.00 68 68 0
..............................................................................................ATTGGCACTTTTTTGAGTGTG............................................................. 21 0 1 59.00 59 58 1
..............................................................................................ATTGGCACTTTTTTGAGTGTGAT........................................................... 23 1 1 49.00 49 49 0
..............................................................................................ATTGGCACTTTTTTGAGTG............................................................... 19 0 1 31.00 31 28 3
...............................................................................................TTGGCACTTTTTTGAGTGTGAT........................................................... 22 1 1 27.00 27 27 0
................................................................................................TGGCACTTTTTTGAGTGTGT............................................................ 20 1 1 17.00 17 17 0
..............................................................................................ATTGGCACTTTTTTGAGTGTGTT........................................................... 23 1 1 16.00 16 16 0
..............................................................................................ATTGGCACTTTTTTGAGTGTGC............................................................ 22 1 1 13.00 13 13 0
...............................................................................................TTGGCACTTTTTTGAGTGTGA............................................................ 21 1 1 11.00 11 11 0
...............................................................................................TTGGCACTTTTTTGAGTGTGAA........................................................... 22 2 1 8.00 8 8 0
...............................................................................................TTGGCACTTTTTTGAG................................................................. 16 0 2 6.50 13 13 0
.............................................................................................AATTGGCACTTTTTTGAGTGTGT............................................................ 23 2 2 5.00 10 10 0
...............................................................................................TTGGCACTTTTTTGAGTGT.............................................................. 19 0 1 5.00 5 5 0
...............................................................................................TTGGCACTTTTTTGAGT................................................................ 17 0 2 5.00 10 10 0
..............................................................................................ATTGGCACTTTTTTGAGTGGGT............................................................ 22 2 1 5.00 5 5 0
..............................................................................................ATTGGCACTTTTTTGA.................................................................. 16 0 4 4.25 17 14 3
.................................................................................................GGCACTTTTTTGAGTGTGT............................................................ 19 1 3 3.33 10 10 0
..............................................................................................ATTGGCACTTTTTTGAGTGTGAA........................................................... 23 2 1 3.00 3 3 0
..........................................................................................TGTGATTGGCACTTTTTTGAG................................................................. 21 1 1 3.00 3 3 0
.............................................................................................AATTGGCACTTTTTTGAGTGT.............................................................. 21 1 1 3.00 3 2 1
................................................................................................TGGCACTTTTTTGAGTGTGAT........................................................... 21 1 1 2.00 2 2 0
..............................................................................................ATTGGCCCTTTTTTGAGTGTGT............................................................ 22 2 2 2.00 4 4 0
..............................................................................................ATTGGCACTTTTTTGAGCGTGT............................................................ 22 2 1 2.00 2 2 0
...............................................................................................TTGGCACTTTTTTGAGTGTG............................................................. 20 0 1 2.00 2 1 1
..............................................................................................ATTGGCACTTTTTTGAGTGTGAAA.......................................................... 24 2 1 2.00 2 2 0
...........................................................................................AAAATTGGCACTTTTTTGAGTGT.............................................................. 23 2 1 2.00 2 2 0
..............................................................................................ATTGGCACTTTTTTGAGTGCGT............................................................ 22 2 1 2.00 2 2 0
................................................................................................TGGCACTTTTTTGAGTGTGTT........................................................... 21 1 1 2.00 2 2 0
..............................................................................................ATTGGCACTTTTTTGAGGGTGT............................................................ 22 2 2 1.50 3 3 0
..............................................................................................ATTGGCACTTTTTTGAGTGTTA............................................................ 22 2 2 1.50 3 3 0
...............................................................................................TTGGCACTTTTTTGAGCGTGAT........................................................... 22 2 1 1.00 1 1 0
..............................................................................................ATTGGCGCTTTTTTGAGTGT.............................................................. 20 1 1 1.00 1 0 1
..............................................................................................ATTGGCACTTTTTTGAGTGTA............................................................. 21 1 1 1.00 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGTCTT........................................................... 23 2 1 1.00 1 1 0
..............................................................................................TTTGGCACTTTTTTGAGTGTG............................................................. 21 1 1 1.00 1 0 1
..............................................................................................ACTGGCACTTTTTTGAGTGT.............................................................. 20 1 1 1.00 1 1 0
.........................................................CACTCCAAAGGGCGCCATT.................................................................................................... 19 0 1 1.00 1 0 1
..............................................................................................AGTGGCACTTTTTTGAGTGTGA............................................................ 22 2 1 1.00 1 1 0
..............................................................................................ATTGGCACTTTTTTGGGTGT.............................................................. 20 1 1 1.00 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGTGCT........................................................... 23 1 1 1.00 1 1 0
..............................................................................................ATTGGCACTTTTTTGACTGTGT............................................................ 22 2 1 1.00 1 1 0
..............................................................................................ATTGGCAGTTTTTTGAGTGT.............................................................. 20 1 1 1.00 1 1 0
..............................................................................................ATTGGCGCTTTTTTGAGTG............................................................... 19 1 1 1.00 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGTTT............................................................ 22 2 3 1.00 3 3 0
..............................................................................................ATTAGCACTTTTTTGAGTGTGAT........................................................... 23 2 1 1.00 1 1 0
.............................................................................................TATTGGCACTTTTTTGAGTGT.............................................................. 21 1 1 1.00 1 0 1
..............................................................................................ATTGGCACTTTTTTGAGTGTT............................................................. 21 1 1 1.00 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTTTGT............................................................ 22 2 1 1.00 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGTGTA........................................................... 23 2 2 1.00 2 2 0
..............................................................................................ATTGGCGCTTTTTTGAGTGTGT............................................................ 22 2 1 1.00 1 1 0
.............................................................................................AATTGGCACTTTTTTGAGTGTGA............................................................ 23 2 3 0.67 2 2 0
.............................................................................................AATTGGCACTTTTTTGAGT................................................................ 19 1 3 0.67 2 2 0
..............................................................................................ATTGGCACTTTTTTGAGC................................................................ 18 1 3 0.67 2 2 0
............................................................................................AAATTGGCACTTTTTTGAGTG............................................................... 21 2 5 0.60 3 3 0
............................................................................................AAATTGGCACTTTTTTGAGTGTGT............................................................ 24 3 5 0.60 3 3 0
..............................................................................................TTTGGCACTTTTTTGAGTGT.............................................................. 20 1 2 0.50 1 0 1
..............................................................................................ATTGGCACCTTTTTGAGTGTG............................................................. 21 1 2 0.50 1 1 0
..............................................................................................AATGGCACTTTTTTGAGTGTGT............................................................ 22 2 2 0.50 1 1 0
..............................................................................................ATTGGCTCTTTTTTGAGTGTGT............................................................ 22 2 2 0.50 1 1 0
...............................................................................................TTGGCACTTTTTTGAGTGTGTC........................................................... 22 2 2 0.50 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGTTAT........................................................... 23 2 2 0.50 1 1 0
...............................................................................................TTGGCACTTTTTTGAGTGTGTA........................................................... 22 2 2 0.50 1 1 0
...............................................................................................TTGGCACTTTCTTGAGTGAGG............................................................ 21 2 4 0.50 2 2 0
..............................................................................................ATTGGCACTTTTTTGGGTGTGT............................................................ 22 2 2 0.50 1 1 0
................................................................................................TGGCACTTTTTTGAGT................................................................ 16 0 4 0.50 2 2 0
..............................................................................................CTTGGCACTTTTTTGAGTGTGT............................................................ 22 2 2 0.50 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGCGCT........................................................... 23 2 2 0.50 1 1 0
..............................................................................................ATTGGCAATTTTTTGAGTGTGT............................................................ 22 2 4 0.50 2 2 0
..............................................................................................ATTGGCACTTTTTTGAGTGAGT............................................................ 22 2 3 0.33 1 1 0
..............................................................................................ATTGACACTTTTTTGAGTGTGT............................................................ 22 2 3 0.33 1 1 0
..............................................................................................ATTGGCAATTTTTTGAGTG............................................................... 19 1 3 0.33 1 1 0
..............................................................................................ATTGGCACTTTTTTGATTGTGT............................................................ 22 2 3 0.33 1 1 0
..............................................................................................ATTGGCGCTTTTTTGAGT................................................................ 18 1 3 0.33 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGTAT............................................................ 22 2 3 0.33 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGAGTGT............................................................ 22 2 3 0.33 1 1 0
..............................................................................................ATTGGCACTTTTCTGAGTGTGT............................................................ 22 2 4 0.25 1 1 0
..............................................................................................ATTGGCCCTTTTTTGAGT................................................................ 18 1 4 0.25 1 1 0
...............................................................................................TTGGCCCTTTTTTGAGTGTGT............................................................ 21 2 4 0.25 1 1 0
................................................................................................TGGCACTTTTTTGAGTGTGAAT.......................................................... 22 3 20 0.20 4 4 0
..............................................................................................ATTGGCGCTTTTTTGAG................................................................. 17 1 5 0.20 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGG................................................................ 18 1 5 0.20 1 1 0
..............................................................................................ATTGGTACTTTTTTGAGTGTGT............................................................ 22 2 5 0.20 1 1 0
..............................................................................................ATTGGCAGTTTTTTGAGTGTGT............................................................ 22 2 5 0.20 1 1 0
..............................................................................................ATTGGCACTTTTTTG................................................................... 15 0 10 0.20 2 0 2
..............................................................................................ATTGACACTTTTTTGAGTGTGA............................................................ 22 2 5 0.20 1 1 0
..............................................................................................AGTGGCACTTTTTTGAGT................................................................ 18 1 6 0.17 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTA............................................................... 19 1 6 0.17 1 1 0
..............................................................................................ATTGGCACTTTTTTGAGTGTCAA........................................................... 23 3 12 0.17 2 2 0
..............................................................................................ATTGCCACTTTTTTGAGTGTGT............................................................ 22 2 7 0.14 1 1 0
................................................................................................TGGCAATTTTTTGAGTGTGAT........................................................... 21 2 10 0.10 1 1 0
..............................................................................................ATTGGCACTTTTTTTAGT................................................................ 18 1 11 0.09 1 1 0
..............................................................................................ATTGGCACTTTTTCGAGT................................................................ 18 1 12 0.08 1 1 0
..............................................................................................ATTGGCACTTTTTTAAGT................................................................ 18 1 12 0.08 1 1 0
..............................................................................................ATTGGCCCTTTTTTGAG................................................................. 17 1 16 0.06 1 1 0
..............................................................................................ATTGGCACTCTTTTGAG................................................................. 17 1 20 0.05 1 1 0
...............................................................................................TTGGCACTTTCTTGAGTGAGGC........................................................... 22 3 20 0.05 1 1 0

Anti-sense strand reads

ACTAACCCCTCGTACACGCTTCCCGACGGTGCAAAACGAAATAAAACACGTCACGAGGTGAGGTTTCCCGCGGTAAGTCCATGTGGTTTAATACTAACCGTGAAAAAACTCACACCATTAAGTGTTGTACATGTTGATGTATACAGTCGGGACCTCTTTCCGCTACACTTGTGTCT
*************************************************..(((((...((((.(((((.((((((.((((.(((..............))).)))).)))))).))))).))))...))))).****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:26 AM