ID:

ocu_24

 Coordinate:

chrUn0002:9238531-9238613 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.3 -32.2

Sense Strand Reads

TGTAGAGAACTGTGAACCCTGATGGGACAGCACCTTCACATTGATGCTCTGCGCCCTGCCCTACTCAGGGTTGCCCTGCCATGTGAATCTGTAAGCATTCAGGGCTCCTCTGGGTAGAGCATGACTCAACAATTACACCATCTCCAGTGGCCTCCAGACTGCTTATGGGGTGCAGCTGCTGAC
**********************************************..........(((.((((((((((..((((((..((((..........)))).))))))..)))))))))).)))...........*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
................................................................................................ATTCAGGGCTCCTCTGGGTAG.................................................................. 21 0 1 269.00 269 254 15
................................................................................................ATTCAGGGCTCCTCTGGGTAGAT................................................................ 23 1 1 210.00 210 208 2
................................................................................................ATTCAGGGCTCCTCTGGGTAGA................................................................. 22 0 1 162.00 162 141 21
................................................................................................ATTCAGGGCTCCTCTGGGT.................................................................... 19 0 1 153.00 153 128 25
................................................................................................ATTCAGGGCTCCTCTGGGTAGT................................................................. 22 1 1 94.00 94 92 2
................................................................................................ATTCAGGGCTCCTCTGGGTA................................................................... 20 0 1 81.00 81 29 52
................................................................................................ATTCAGGGCTCCTCTGGGTAT.................................................................. 21 1 1 41.00 41 41 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGAA................................................................ 23 1 1 21.00 21 18 3
................................................................................................ATTCAGGGCTCCTCTGGGTAA.................................................................. 21 1 1 8.00 8 8 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGAC................................................................ 23 1 1 8.00 8 8 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGAAAT.............................................................. 25 3 1 8.00 8 8 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGAAT............................................................... 24 2 1 7.00 7 7 0
...............................................................................................AATTCAGGGCTCCTCTGGGT.................................................................... 20 1 1 5.00 5 0 5
...............................................................................................AATTCAGGGCTCCTCTGGGTAGA................................................................. 23 1 1 5.00 5 4 1
................................................................................................ATTCAGGGCTCCTCTGGGTAAT................................................................. 22 2 1 5.00 5 5 0
................................................................................................ATTCAGGCCTCCTCTGGGTAGA................................................................. 22 1 1 4.00 4 4 0
...............................................................................................AATTCAGGGCTCCTCTGGGTA................................................................... 21 1 1 4.00 4 0 4
.................................................................................................TTCAGGGCTCCTCTGGGTAGA................................................................. 21 0 1 4.00 4 4 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGATAT.............................................................. 25 3 1 4.00 4 4 0
.................................................................................................TTCAGGGCTCCTCTGGGTAGAT................................................................ 22 1 1 4.00 4 4 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGAACG.............................................................. 25 2 1 4.00 4 4 0
...............................................................................................AATTCAGGGCTCCTCTGGGTAG.................................................................. 22 1 1 3.00 3 3 0
................................................................................................ATTCAGGGCTCCTCTGGGC.................................................................... 19 1 1 3.00 3 3 0
................................................................................................ATTCAGGGCTCCTCTGGGCA................................................................... 20 1 1 3.00 3 3 0
................................................................................................ATTCAGGGCTCCTCTGGGCAGA................................................................. 22 1 1 2.00 2 2 0
.................................................................................................TTCAGGGCTCCTCTGGGTAG.................................................................. 20 0 1 2.00 2 2 0
................................................................................................ATTCAGGGCTCCTCTGGGAAG.................................................................. 21 1 1 2.00 2 1 1
................................................................................................ATTCAGGGCTCCTCTGGGCAG.................................................................. 21 1 1 2.00 2 2 0
................................................................................................ATTCAGGGCTCCTCTGGCTAG.................................................................. 21 1 1 2.00 2 2 0
................................................................................................ATTCAGGGCTCCTCTGGG..................................................................... 18 0 1 2.00 2 0 2
................................................................................................ATTCAGGGCTCCTCTGGGTAGCT................................................................ 23 2 1 2.00 2 1 1
.............................................................TACTCAGGGTTGCCCTGCCAT..................................................................................................... 21 0 1 1.00 1 0 1
................................................................................................ATTCAGGGCTCATCTGGGTAGA................................................................. 22 1 1 1.00 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGGGAG.................................................................. 21 1 1 1.00 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGC................................................................. 22 1 1 1.00 1 1 0
................................................................................................TTTCAGGGCTCCTCTGGGTAG.................................................................. 21 1 1 1.00 1 0 1
...................................................................................................CAGGGCTCCTCTGGGTAG.................................................................. 18 0 1 1.00 1 1 0
...............................................................................................AATTCAGGGCTCCTCTGGGTAGAA................................................................ 24 2 1 1.00 1 1 0
..................................................................................................TCAGGGCTCCTCTGGGTAGAAT............................................................... 22 2 1 1.00 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGTTAGA................................................................. 22 1 1 1.00 1 1 0
.................................................................................................TTCAGGGCTCCTCTGGGTA................................................................... 19 0 1 1.00 1 0 1
.................................................................................................TTCAGGGCTCCTCTGGGTAGAGT............................................................... 23 1 1 1.00 1 1 0
..................................................................................................TCAGGGCTCCTCTGGGTAGAT................................................................ 21 1 1 1.00 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGGAAGA................................................................. 22 1 1 1.00 1 0 1
................................................................................................ATTCAGGGCTCCTCTGGGTAGACAT.............................................................. 25 3 1 1.00 1 1 0
...........................................................................................CGAGCATTCAGGGCTCCTCTGGGTAG.................................................................. 26 2 1 1.00 1 1 0
...........................................................................................AAGGAATTCAGGGCTCCTCTGGGTA................................................................... 25 3 1 1.00 1 0 1
................................................................................................ATTCAGGGCTCCTCTGGGTAGAGT............................................................... 24 1 1 1.00 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGGCAGAT................................................................ 23 2 1 1.00 1 1 0
................................................................................................ATTCAGGGCTCCTATGGGTAG.................................................................. 21 1 1 1.00 1 1 0
................................................................................................ATTCAGCGCTCCTCTGGGTAGA................................................................. 22 1 1 1.00 1 1 0
................................................................................................ATCCAGGGCTCCTCTGGGTAG.................................................................. 21 1 1 1.00 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGGA.................................................................... 19 1 3 0.67 2 2 0
................................................................................................ATTCAGGGCTCCTCTGGGAA................................................................... 20 1 2 0.50 1 1 0
....................................................................................................AGGGCTCCTCTGGGTAG.................................................................. 17 0 2 0.50 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGTAT............................................................... 24 3 4 0.50 2 2 0
................................................................................................ATTCAGGGCTCCTCTGGGTAGTT................................................................ 23 2 2 0.50 1 1 0
................................................................................................ATTCAGGGCTCCACTGGGT.................................................................... 19 1 2 0.50 1 1 0
....................................................................................................AGGGCTCCTCTGGGTAGAT................................................................ 19 1 2 0.50 1 1 0
................................................................................................ATTCAGGGTTCCTCTGGGTAGT................................................................. 22 2 2 0.50 1 1 0
..............................................................................................AGATTCAGGGCTCCTCTGGGT.................................................................... 21 2 5 0.40 2 2 0
...............................................................................................AATTCAGGGCTCCTCTGGGTAT.................................................................. 22 2 3 0.33 1 1 0
................................................................................................ATCCAGGGCTCCTCTGGGTAT.................................................................. 21 2 3 0.33 1 1 0
................................................................................................ATTCGGGGCTCCTCTGGGT.................................................................... 19 1 3 0.33 1 1 0
...............................................................................................AATTCAGGGCTCCTCTGGGGAG.................................................................. 22 2 4 0.25 1 1 0
................................................................................................ATTCAGGGGTCCTCTGGGTAT.................................................................. 21 2 4 0.25 1 1 0
...............................................................................................AATTCAGGGCTCCTCTGGGAAG.................................................................. 22 2 5 0.20 1 1 0
................................................................................................ATGCAGGGCTCCTCTGGGT.................................................................... 19 1 6 0.17 1 1 0
................................................................................................ATTCAGGGCTCCTCT........................................................................ 15 0 7 0.14 1 1 0
................................................................................................ATTCAGGGCTCCTCTGGGTTT.................................................................. 21 2 10 0.10 1 1 0
...................................................................................................CAGGGCTCCTCTGGGT.................................................................... 16 0 10 0.10 1 1 0
.................................................................................................TTCAGGGCTCCTCTGGGC.................................................................... 18 1 16 0.06 1 0 1
................................................................................................ATTCCGGGCTCCTCTGG...................................................................... 17 1 19 0.05 1 0 1
....................................................................................................AGGGCTCCTCTGGGT.................................................................... 15 0 20 0.05 1 1 0

Anti-sense strand reads

ACATCTCTTGACACTTGGGACTACCCTGTCGTGGAAGTGTAACTACGAGACGCGGGACGGGATGAGTCCCAACGGGACGGTACACTTAGACATTCGTAAGTCCCGAGGAGACCCATCTCGTACTGAGTTGTTAATGTGGTAGAGGTCACCGGAGGTCTGACGAATACCCCACGTCGACGACTG
***************************************************..........(((.((((((((((..((((((..((((..........)))).))))))..)))))))))).)))...........********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM