ID:

ocu_23

 Coordinate:

chrUn0002:9242134-9242208 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.9 -40.5
mature
star
  1. chrUn0002:9242179-9242199 -
  2. chrUn0002:9263110-9263130 -
  3. chrUn0002:9279242-9279262 -

Sense Strand Reads

CTGTGGGGGATGGATCCTGATGGGCCAGGACCTCCACGTGCATGGTGTGTGCAGTGCCCTACCTAGAACAGCAATGGAGTGTGAATCCATGACCTTCCTGTGCTGTTCTGGGTAGTGTATGGCTCATCAATATCATCCTCTGTATTGGCCTCTGGACTGGAAGTAGGGTTGGAGC
********************************************..(((.((.((((.(((((((((((((((..((((.((.........)).))))..))))))))))))))).)))).)).)))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..............................................................................................TTCCTGTGCTGTTCTGGGTAGT........................................................... 22 0 1 326.00 326 320 6
...............................................................................................TCCTGTGCTGTTCTGGGTAGT........................................................... 21 0 1 40.00 40 40 0
...........................................................TACCTAGAACAGCAATGGAGT............................................................................................... 21 0 3 25.33 76 0 76
..............................................................................................TTCCTGTGCTGTTCTGGGTA............................................................. 20 0 1 21.00 21 2 19
.............................................................................................ATTCCTGTGCTGTTCTGGGTAGT........................................................... 23 1 1 12.00 12 12 0
.................................................................................................CTGTGCTGTTCTGGGTAGT........................................................... 19 0 1 11.00 11 11 0
.............................................................................................CTTCCTGTGCTGTTCTGGGTAGT........................................................... 23 0 1 8.00 8 8 0
..............................................................................................TTCCTGTGCTGTTCTGGGTAG............................................................ 21 0 1 8.00 8 7 1
..............................................................................................TTCCTGTGCTGTTCTCGGTAGT........................................................... 22 1 6 7.83 47 42 5
.................................................................................................CTGTGCTGTTCTCGGTAGT........................................................... 19 1 6 7.00 42 42 0
................................................................................................CCTGTGCTGTTCTGGGTAGTGT......................................................... 22 0 1 4.00 4 4 0
...........................................................TACCTAGAACAGCAATGGAGTGT............................................................................................. 23 0 2 3.50 7 4 3
...................................................................................................GTGCTGTTCTGGGTAGT........................................................... 17 0 1 3.00 3 3 0
..............................................................................................TTCCTGTGCTGTTCTGGGT.............................................................. 19 0 1 3.00 3 2 1
...........................................................TACCTAGAACAGCAATGGAGTG.............................................................................................. 22 0 2 2.50 5 0 5
..............................................................................................TTCCTGTTCTGTTCTGGGTAGT........................................................... 22 1 1 2.00 2 2 0
................................................................................................CCTGTGCTGTTCTGGGTAGT........................................................... 20 0 1 2.00 2 2 0
...............................................................................................TCCTGTGCTGTTCTGGGT.............................................................. 18 0 1 2.00 2 2 0
..............................................................................................TTCCTGTGCTGCTCTGGGTAGT........................................................... 22 1 2 2.00 4 4 0
..............................................................................................TTCCTGCGCTGTTCTGGGTAGT........................................................... 22 1 1 2.00 2 2 0
..............................................................................................TTCCTGTGCTGTTCTGGGTAGTT.......................................................... 23 1 1 2.00 2 2 0
..............................................................................................TTCCTGTGCTGTTCTGGGGAGT........................................................... 22 1 1 2.00 2 2 0
...............................................................................................TCCTGTGCTGCTCTGGGTAGT........................................................... 21 1 2 1.50 3 3 0
...................................................................................................GTGCTGTTCTCGGTAGT........................................................... 17 1 7 1.29 9 9 0
...............................................................................................TCCTGTGCTGTTCTGGGTA............................................................. 19 0 1 1.00 1 0 1
..............................................................................................CTCCTGTGCTGTTCTGGGTAGT........................................................... 22 1 1 1.00 1 1 0
..............................................................................................TTCCTGTGCTTTTCTGGGTAGT........................................................... 22 1 1 1.00 1 1 0
..............................................................................................TTCCTGTGCTGTTCTGGGTAGTTT......................................................... 24 1 1 1.00 1 0 1
...............................................................................................TCCTGGGCTGTTCTGGGTAGT........................................................... 21 1 1 1.00 1 1 0
..............................................................................................TTCCTGTGCTGTTCCGGGTAGT........................................................... 22 1 1 1.00 1 1 0
.................................................................................................CTGTGCTGTTCTGGGTAG............................................................ 18 0 1 1.00 1 1 0
..............................................................................................TCCCTGTGCTGTTCTGGGTAGT........................................................... 22 1 1 1.00 1 1 0
..............................................................................................TTCCTGTGCTGTTCTGGGTAGC........................................................... 22 1 1 1.00 1 1 0
..............................................................................................TTACTGTGCTGTTCTGGTTAGT........................................................... 22 2 1 1.00 1 1 0
...........................................................................................AGTTTCCTGTGCTGTTCTGGGT.............................................................. 22 2 1 1.00 1 1 0
..................................................................................................TGTGCTGTTCTCGGTAGT........................................................... 18 1 7 1.00 7 7 0
..............................................................................................TTCCTGTGCTGTTCTGGG............................................................... 18 0 1 1.00 1 1 0
..................................................................................................TGTGCTGTTCTGGGTAGT........................................................... 18 0 1 1.00 1 1 0
.............................................................................................ATTCCTGTGCTGTTCTGGGTA............................................................. 21 1 1 1.00 1 0 1
..............................................................................................TTACTGTGCTGTTCTGGGTAGT........................................................... 22 1 1 1.00 1 1 0
.............................................................................................CTTCCTGTGCTGTTCTGGG............................................................... 19 0 1 1.00 1 1 0
..............................................................................................TTCCTGTGCCGTTCTGGGTAGT........................................................... 22 1 1 1.00 1 1 0
.....................................................................................ACCCTGAACTTCCTGTGCTGTTCTGGGTA............................................................. 29 3 1 1.00 1 0 1
...............................................................................................TCCTGTGCTGTTCTCGGTAGT........................................................... 21 1 6 0.83 5 5 0
..........................................................ATACCTAGAACAGCAATGGAG................................................................................................ 21 1 3 0.67 2 0 2
..........................................................ATACCTAGAACAGCAATGGAGT............................................................................................... 22 1 3 0.67 2 1 1
............................................................ACCTAGAACAGCAATGGAGT............................................................................................... 20 0 3 0.67 2 0 2
...........................................................TACCTAGAACAGCAATGGA................................................................................................. 19 0 3 0.67 2 0 2
................................................................................................CCTGTGCTGTTCTGTGTAGT........................................................... 20 1 2 0.50 1 1 0
..............................................................................................TTCCTGTGCTGTTCTCGGTAGTT.......................................................... 23 2 6 0.50 3 3 0
..............................................................................................TTCCTGTGCTGTTCTCGGTAGTATTT....................................................... 26 3 2 0.50 1 0 1
...............................................................................................GCCTGTGCTGTTCTGGGTAGT........................................................... 21 1 2 0.50 1 1 0
.............................................................................................ATTCCTGTGCTGTTCTCGGTAGT........................................................... 23 2 6 0.50 3 0 3
................................................................AGAACAGCAATGGAGTGT............................................................................................. 18 0 5 0.40 2 2 0
..............................................................................................TTCCTGTGCTGCTCTGGGTAAT........................................................... 22 2 5 0.40 2 2 0
..............................................................CTAGAACAGCAATGGAGTGT............................................................................................. 20 0 5 0.40 2 2 0
.................................................................................................CTGTGCTGCTCTGGGTAGT........................................................... 19 1 5 0.40 2 2 0
...........................................................TACCTAGAACAGCAATGGAGTT.............................................................................................. 22 1 3 0.33 1 0 1
...........................................................TACCTAGCACAGCAATGGAGT............................................................................................... 21 1 3 0.33 1 0 1
............................................................................................AATTCCTGTGCTGTTCTGGGTA............................................................. 22 2 3 0.33 1 0 1
...........................................................TACCTAGAACAGCAATGGAG................................................................................................ 20 0 3 0.33 1 0 1
............................................................ACCTAGAACAGCAATGG.................................................................................................. 17 0 3 0.33 1 0 1
...........................................................TACCTAGAATAGCAATGGAGT............................................................................................... 21 1 3 0.33 1 0 1
..........................................................................................ATGCTTCCTGTGCTGTTCTGGGTA............................................................. 24 3 5 0.20 1 0 1
.................................................................................................CTGTGCTGTCCTGGGTAGT........................................................... 19 1 5 0.20 1 1 0
...............................................................TAGAACAGCAATGGAGTGT............................................................................................. 19 0 5 0.20 1 1 0
..............................................................................................TTCCTGTGCTGTTCCCGGTAGT........................................................... 22 2 6 0.17 1 1 0
.....................................................................................................GCTGTTCTGGGTAGT........................................................... 15 0 7 0.14 1 1 0
..............................................................CTAGAACAGCAATGGAGT............................................................................................... 18 0 8 0.13 1 0 1
................................................................AGAACAGCAATGGAGT............................................................................................... 16 0 10 0.10 1 0 1
..............................................................................................TTCCTGTGCTGTTCT.................................................................. 15 0 20 0.05 1 0 1

Anti-sense strand reads

GACACCCCCTACCTAGGACTACCCGGTCCTGGAGGTGCACGTACCACACACGTCACGGGATGGATCTTGTCGTTACCTCACACTTAGGTACTGGAAGGACACGACAAGACCCATCACATACCGAGTAGTTATAGTAGGAGACATAACCGGAGACCTGACCTTCATCCCAACCTCG
********************************************..(((.((.((((.(((((((((((((((..((((.((.........)).))))..))))))))))))))).)))).)).)))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM