ID:

ocu_21

 Coordinate:

chrUn0002:9246687-9246768 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.5 -36.5
mature
  1. chrUn0002:9246701-9246722 -
  2. chrUn0002:9253158-9253179 -
  3. chrUn0002:9256430-9256451 -
  4. chrUn0002:9272391-9272412 -
  5. chrUn0002:9286959-9286980 -
star
  1. chrUn0002:9246737-9246757 -
  2. chrUn0002:9253194-9253214 -
  3. chrUn0002:9256466-9256486 -
  4. chrUn0002:9272427-9272447 -
  5. chrUn0002:9286995-9287015 -

Sense Strand Reads

GCTGGGGGTGGGTGGAGCCTGATGGACCAGGACGTCCACGTGCATGCTGTGTGCAGTGCCCTGCCTAGAACAGCAATGGAGTGTGAATCAATGACCTTCCTGTGCTGTTCTCGGTAGAGTATGGCTCATCAATATCATCCTTTGTGTTGCCATCTGGACTGGAAGTAGGATTGGATCTGCAG
**********************************************..(((.((.((((.(((((.(((((((((..((((.((.........)).))))..))))))))).))))).)))).)).)))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
................................................................................................TTCCTGTGCTGTTCTCGGTAGA................................................................ 22 0 5 68.00 340 293 47
...............................................................................................ATTCCTGTGCTGTTCTCGGT................................................................... 20 1 5 43.40 217 0 217
................................................................................................TTCCTGTGCTGTTCTCGGTA.................................................................. 20 0 5 31.40 157 21 136
................................................................................................TTCCTGTGCTGTTCTCGGTAGAT............................................................... 23 1 5 26.60 133 131 2
................................................................................................TTCCTGTGCTGTTCTCGGTAG................................................................. 21 0 5 25.80 129 95 34
................................................................................................TTCCTGTGCTGTTCTCGGT................................................................... 19 0 5 22.00 110 81 29
...................................................................................................CTGTGCTGTTCTCGGTAGAT............................................................... 20 1 5 11.20 56 56 0
...............................................................................................ATTCCTGTGCTGTTCTCGGTA.................................................................. 21 1 5 9.40 47 0 47
................................................................................................TTCCTGTGCTGTTCTCGGTAGAA............................................................... 23 1 5 9.20 46 44 2
................................................................................................TTCCTGTGCTGTTCTCGGTAGT................................................................ 22 1 6 7.83 47 42 5
.............................................................TGCCTAGAACAGCAATGGAGT.................................................................................................... 21 0 5 7.80 39 12 27
.....................................................................................................GTGCTGTTCTCGGTAGAT............................................................... 18 1 6 7.17 43 43 0
...................................................................................................CTGTGCTGTTCTCGGTAGT................................................................ 19 1 6 7.00 42 42 0
...................................................................................................CTGTGCTGTTCTCGGTAGA................................................................ 19 0 5 6.40 32 32 0
...................................................................................................CTGTGCTGTTCTCGGTAG................................................................. 18 0 5 6.00 30 29 1
.....................................................................................................GTGCTGTTCTCGGTAGA................................................................ 17 0 5 6.00 30 30 0
...................................................................................................CTGTGCTGTTCTCGGT................................................................... 16 0 5 5.60 28 28 0
.................................................................................................TCCTGTGCTGTTCTCGGTAGAT............................................................... 22 1 5 3.80 19 18 1
....................................................................................................TGTGCTGTTCTCGGTAGAT............................................................... 19 1 5 2.60 13 13 0
.................................................................................................TCCTGTGCTGTTCTCGGTAGA................................................................ 21 0 5 2.40 12 7 5
....................................................................................................TGTGCTGTTCTCGGTAGA................................................................ 18 0 5 2.20 11 11 0
.....................................................................................................GTGCTGTTCTCGGTAG................................................................. 16 0 5 2.20 11 11 0
................................................................................................TTCCTGTGCTGTTCTCGGTAGAAT.............................................................. 24 1 5 2.00 10 10 0
.......................................................................................................GCTGTTCTCGGTAGAT............................................................... 16 1 14 1.50 21 21 0
.................................................................................................TCCTGTGCTGTTCTCGGT................................................................... 18 0 5 1.40 7 3 4
.....................................................................................................GTGCTGTTCTCGGTAGT................................................................ 17 1 7 1.29 9 9 0
....................................................................................................TGTGCTGTTCTCGGTAG................................................................. 17 0 5 1.20 6 6 0
.................................................................................................TCCTGTGCTGTTCTCGGTA.................................................................. 19 0 5 1.20 6 0 6
...............................................................................................CTTCCTGTGCTGTTCTCGGTAG................................................................. 22 0 5 1.20 6 6 0
................................................................................................TTCCTGTGCTGTTCTCGG.................................................................... 18 0 5 1.20 6 6 0
................................................................................................TTCCTGTGCTGTTCTCGGTAGAAA.............................................................. 24 2 5 1.00 5 5 0
.........................................................................................AGTCCCCTTCCTGTGCTGTTCTCGGTA.................................................................. 27 3 1 1.00 1 0 1
.........................................................................................AAGCACATTCCTGTGCTGTTCTCGGTA.................................................................. 27 3 1 1.00 1 0 1
...............................................................................................ATTCCTGTGCTGTTCTCGGTAGA................................................................ 23 1 5 1.00 5 2 3
.............................................................................................AAATTCCTGTGCTGTTCTCGGTAG................................................................. 24 2 5 1.00 5 5 0
................................................................................................TTCCTGTGCTGTTCTCGGTAGAATCTA........................................................... 27 3 1 1.00 1 0 1
...................................................................................................CTGTGCTGTTCTCGGTAGAA............................................................... 20 1 5 1.00 5 5 0
.........................................................................................AACGCGCTTCCTGTGCTGTTCTCGGT................................................................... 26 3 1 1.00 1 0 1
.........................................................................................AAGCCCCTTCCTGTGCTGTTCTCGGTA.................................................................. 27 3 1 1.00 1 0 1
........................................................................................CAAGTATCTTCCTGTGCTGTTCTCGGTA.................................................................. 28 3 1 1.00 1 0 1
.............................................................TGCCTAGAACAGCAATGGAGTGT.................................................................................................. 23 0 3 1.00 3 2 1
....................................................................................................TGTGCTGTTCTCGGTAGT................................................................ 18 1 7 1.00 7 7 0
.................................................................................................TCCTGTGCTGTTCTCGGTAGT................................................................ 21 1 6 0.83 5 5 0
................................................................................................TTCCTGTGCTGTTCTCGGTAT................................................................. 21 1 5 0.80 4 4 0
...............................................................................................ATTCCTGTGCTGTTCTCGGTAG................................................................. 22 1 5 0.80 4 1 3
.................................................................................................TCCTGTGCTGTTCTCGGTAGAA............................................................... 22 1 5 0.80 4 4 0
.......................................................................................................GCTGTTCTCGGTAGA................................................................ 15 0 5 0.80 4 4 0
.............................................................TGCCTAGAACAGCAATGGAGTG................................................................................................... 22 0 5 0.80 4 1 3
.........................................GCATGCTGTGTGCAGTGCCC......................................................................................................................... 20 0 7 0.71 5 5 0
.............................................................................................AGATTCCTGTGCTGTTCTCGGT................................................................... 22 2 6 0.67 4 3 1
...............................................................................................ATTCCTGTGCTGTTCTCGGTAGAA............................................................... 24 2 5 0.60 3 2 1
................................................................................................TTCCTGTGCTGTTCTCGGTAGATT.............................................................. 24 1 5 0.60 3 3 0
................................................................................................TTCCTGTGCTGTTCTCGGTAGAC............................................................... 23 1 5 0.60 3 3 0
.............................................................TGCCTAGAACAGCAATGGAG..................................................................................................... 20 0 5 0.60 3 0 3
................................................................................................TTCCTGTGCTGTTCTCGGTAAA................................................................ 22 1 5 0.60 3 3 0
................................................................................................TTCCTGTGCTGTTCTCGGTAA................................................................. 21 1 5 0.60 3 3 0
....................................................................................................TGTGCTGTTCTCGGTAGAAT.............................................................. 20 1 5 0.60 3 3 0
...............................................................................................ATTCCTGTGCTGTTCTCGGTAGT................................................................ 23 2 6 0.50 3 0 3
................................................................................................TTCCTGTGCTGTTCTCGGA................................................................... 19 1 6 0.50 3 3 0
................................................................................................TTCCTGTGCTGTTCTCGGTAGTT............................................................... 23 2 6 0.50 3 3 0
................................................................................................TTCCTGTGCTGTTCTCGGTAGTATTT............................................................ 26 3 2 0.50 1 0 1
..................................................................AGAACAGCAATGGAGTGT.................................................................................................. 18 0 5 0.40 2 2 0
................................................................................................TTCCTGTGCTGTTCTCGGCAGA................................................................ 22 1 5 0.40 2 2 0
................................................................CTAGAACAGCAATGGAGTGT.................................................................................................. 20 0 5 0.40 2 2 0
.............................................................TGCCTAGAACAGCAATGGA...................................................................................................... 19 0 5 0.40 2 0 2
..........................................................................................AGGGTCTTCCTGTGCTGTTCTCGGT................................................................... 25 3 5 0.40 2 0 2
.................................................................................................TCCTGTGCTGTTCTCGGTAG................................................................. 20 0 5 0.40 2 1 1
..........................................................................................AGGGCCTTCCTGTGCTGTTCTCGGTA.................................................................. 26 2 5 0.40 2 0 2
.............................................................................................AGTTTCCTGTGCTGTTCTCGGT................................................................... 22 2 5 0.40 2 0 2
................................................................................................TTCCTGTGCTGTTCTCGGC................................................................... 19 1 5 0.40 2 2 0
..................................................................................................CCTGTGCTGTTCTCGGT................................................................... 17 0 5 0.40 2 2 0
..............................................................GCCTAGAACAGCAATGGAGT.................................................................................................... 20 0 5 0.40 2 0 2
...............................................................................................ATTCCTGTGCTGTTCTCGGTAGAT............................................................... 24 2 5 0.40 2 2 0
....................................................................................................TGTGCTGTTCTCGGTAGAA............................................................... 19 1 5 0.40 2 2 0
...................................................................................................CTGTGCTGTTCTCGGTA.................................................................. 17 0 5 0.40 2 1 1
................................................................................................TTCCTGTGCTGTTCTC...................................................................... 16 0 14 0.36 5 5 0
.............................................................TGCCTAGAACAGCAATGGAGTGTG................................................................................................. 24 0 3 0.33 1 0 1
..........................................................................................AGCAGCTTCCTGTGCTGTTCTCGGT................................................................... 25 3 6 0.33 2 0 2
....................................................................................................TGTGCTGTTCTCGGT................................................................... 15 0 9 0.33 3 2 1
...................................................................................................CTGTGCTGTTCTCGGTAT................................................................. 18 1 7 0.29 2 2 0
.........................................GCATGCTGTGTGCAGTG............................................................................................................................ 17 0 9 0.22 2 2 0
..............................................................................................AGTTCCTGTGCTGTTCTCGGT................................................................... 21 2 9 0.22 2 2 0
.....................................................................................................GTGCTGTTCTCGGTAGAAT.............................................................. 19 1 5 0.20 1 1 0
................................................................................................TTCCTGCGCTGTTCTCGGTAGATT.............................................................. 24 2 5 0.20 1 1 0
................................................................................................TTCCTGTGCTTTTCTCGGTAG................................................................. 21 1 5 0.20 1 1 0
................................................................................................TTCCTGTGCCGTTCTCGGTAG................................................................. 21 1 5 0.20 1 1 0
..........................................................................................AGCACATTCCTGTGCTGTTCTCGGTA.................................................................. 26 3 5 0.20 1 0 1
................................................................................................TTCCTGTGCTGTTCTCGGTAAAAT.............................................................. 24 2 5 0.20 1 1 0
..............................................................................................CCTTCCTGTGCTGTTCTCGGTA.................................................................. 22 0 5 0.20 1 0 1
..........................................................................................ATGCCCTTCCTGTGCTGTTCTCGGTA.................................................................. 26 1 5 0.20 1 0 1
...........................................................................................GGAAATTCCTGTGCTGTTCTCGGTAGA................................................................ 27 3 5 0.20 1 0 1
.................................................................................................TCCTGTGCTGTTCTCGGTCGAT............................................................... 22 2 5 0.20 1 1 0
............................................................................................GGCCTTCCTGTGCTGTTCTCGGTA.................................................................. 24 1 5 0.20 1 0 1
...............................................................................................AGTCCTGTGCTGTTCTCGGTA.................................................................. 21 2 5 0.20 1 0 1
................................................................................................TTCCTGTGCTGTTCTCGGTAGAGT.............................................................. 24 0 5 0.20 1 1 0
..........................................................................................AGGTCCTTCCTGTGCTGTTCTCGGTA.................................................................. 26 2 5 0.20 1 0 1
................................................................................................TTCATGTGCTGTTCTCGGTAG................................................................. 21 1 5 0.20 1 0 1
................................................................................................CTCCTGTGCTGTTCTCGGTA.................................................................. 20 1 5 0.20 1 0 1
...............................................................................................ATTCCTGTGCTGTTCTCGGTAA................................................................. 22 2 5 0.20 1 0 1
...............................................................................................CTTCCTGTGCTGTTCTCGGTAGA................................................................ 23 0 5 0.20 1 1 0
................................................................................................TTCCTGGGCTGTTCTCGGTAG................................................................. 21 1 5 0.20 1 0 1
.............................................................CGCCTAGAACAGCAATGGAGT.................................................................................................... 21 1 5 0.20 1 0 1
................................................................................................TTCCTGTGCTGTTCTTGGTAGA................................................................ 22 1 5 0.20 1 1 0
...................................................................................................CTGTGCTGTTCTCGGTAGAC............................................................... 20 1 5 0.20 1 1 0
................................................................................................TTACTGTGCTGTTCTCGGTA.................................................................. 20 1 5 0.20 1 0 1
............................................................................................ACTCTTCCTGTGCTGTTCTCGGTAG................................................................. 25 3 5 0.20 1 0 1
...............................................................................................CTTCCTGTGCTGTTCTCGGTA.................................................................. 21 0 5 0.20 1 0 1
..........................................................................................AGGCGCTTCCTGTGCTGTTCTCGGT................................................................... 25 3 5 0.20 1 0 1
...........................................................AATGCCTAGAACAGCAATGGAGTG................................................................................................... 24 2 5 0.20 1 0 1
.....................................................................................................GTGCTGTTCTCGGTAGAG............................................................... 18 0 5 0.20 1 1 0
..........................................................................................AGAACCTTCCTGTGCTGTTCTCGGTAGG................................................................ 28 3 5 0.20 1 0 1
................................................................................................TCCCTGTGCTGTTCTCGGTAGA................................................................ 22 1 5 0.20 1 1 0
................................................................................................CTCCTGTGCTGTTCTCGGTAG................................................................. 21 1 5 0.20 1 1 0
...................................................................................................CTGTGCTGTTCTCGGTAGATTT............................................................. 22 2 5 0.20 1 1 0
..............................................................................................AGTTCCTGTGCTGTTCTCGGTAGA................................................................ 24 2 5 0.20 1 1 0
................................................................................................TTCCTGAGCTGTTCTCGGTAGAGGA............................................................. 25 2 5 0.20 1 1 0
...................................................................................................CTGTGCTGTTCTCGGTAGAAT.............................................................. 21 1 5 0.20 1 1 0
.............................................................................................GATTTCCTGTGCTGTTCTCGGTAGA................................................................ 25 3 5 0.20 1 0 1
................................................................................................TTCCTGTGCTGTTCTCGGTAGC................................................................ 22 1 5 0.20 1 1 0
................................................................................................TTCCTGTTCTGTTCTCGGTA.................................................................. 20 1 5 0.20 1 0 1
................................................................................................TTCCTGTACTGTTCTCGGTA.................................................................. 20 1 5 0.20 1 0 1
..........................................................................................ATTAGATTCCTGTGCTGTTCTCGGTA.................................................................. 26 3 5 0.20 1 0 1
.........................................................GGAATGCCTAGAACAGCAATGGAGT.................................................................................................... 25 3 5 0.20 1 0 1
..........................................................................................AAGAGTTTCCTGTGCTGTTCTCGGT................................................................... 25 3 5 0.20 1 0 1
...................................................................................................CTGTGCTGTTCTCGGCAGA................................................................ 19 1 5 0.20 1 1 0
..................................................................................................CCTGTGCTGTTCTCGGTAGATT.............................................................. 22 1 5 0.20 1 1 0
..........................................................................................AAGCCATTCCTGTGCTGTTCTCGGTA.................................................................. 26 3 5 0.20 1 0 1
............................................................................................AGCCTTCCTGTGCTGTTCTCGGTA.................................................................. 24 2 5 0.20 1 0 1
..........................................................................................ACAAGCTTCCTGTGCTGTTCTCGGT................................................................... 25 3 5 0.20 1 0 1
...............................................................................................CTTCCTGTGCTGTTCTCGGT................................................................... 20 0 5 0.20 1 1 0
..........................................................................................AGGCCCTTCCTGTGCTGTTCTCGGTA.................................................................. 26 2 5 0.20 1 0 1
............................................................................................AAGCTTCCTGTGCTGTTCTCGGT................................................................... 23 2 5 0.20 1 0 1
...............................................................................................GTTCCTGTGCTGTTCTCGGT................................................................... 20 1 5 0.20 1 0 1
...........................................................................................TGAGTTTCCTGTGCTGTTCTCGGTA.................................................................. 25 2 5 0.20 1 0 1
..............................................................................................ACTTCCTGTGCTGTTCTCGGTA.................................................................. 22 1 5 0.20 1 0 1
..........................................................................................ATGCACTTCCTGTGCTGTTCTCGGTA.................................................................. 26 2 5 0.20 1 0 1
................................................................................................TTCCTGTGCTGTTCTCGGTATAT............................................................... 23 2 5 0.20 1 1 0
...............................................................................................ATTCATGTGCTGTTCTCGGTAGA................................................................ 23 2 5 0.20 1 0 1
...................................................................................................CTTTGCTGTTCTCGGTAGA................................................................ 19 1 5 0.20 1 1 0
...............................................................................................TTTCCTGTGCTGTTCTCGGT................................................................... 20 1 5 0.20 1 0 1
..........................................................................................AGGCCCTTCCTGTGCTGTTCTCGGT................................................................... 25 2 5 0.20 1 0 1
..........................................................................................AGCGCCTTCCTGTGCTGTTCTCGGT................................................................... 25 3 5 0.20 1 0 1
...........................................................................................AGAGCTTCCTGTGCTGTTCTCGGTAG................................................................. 26 2 5 0.20 1 0 1
.............................................................................................CACTTCCTGTGCTGTTCTCGGTA.................................................................. 23 2 5 0.20 1 0 1
...................................................................................................CTGTGCTGTTCTCGGTAGAG............................................................... 20 0 5 0.20 1 1 0
..........................................................................................AGAAGCTTCCTGTGCTGTTCTCGGTAG................................................................. 27 3 5 0.20 1 0 1
................................................................................................TTCCTGTGCTGTTCTCGATAGA................................................................ 22 1 5 0.20 1 1 0
.............................................................................................AGCTTCCTGTGCTGTTCTCGGT................................................................... 22 1 5 0.20 1 0 1
.................................................................TAGAACAGCAATGGAGTGT.................................................................................................. 19 0 5 0.20 1 1 0
................................................................................................TTCCTGTTCTGTTCTCGGTAGA................................................................ 22 1 5 0.20 1 0 1
..............................................................................................TGTTCCTGTGCTGTTCTCGGTA.................................................................. 22 2 5 0.20 1 0 1
.............................................................................................CCATTCCTGTGCTGTTCTCGGT................................................................... 22 2 6 0.17 1 0 1
..........................................................................................AGGGCCTTCCTGTGCCGTTCTCGGT................................................................... 25 3 6 0.17 1 0 1
............................................................................................TAGATTCCTGTGCTGTTCTCGGTA.................................................................. 24 3 6 0.17 1 0 1
............................................................................................ACTCTTCCTGTGCTGTTCTCGGTA.................................................................. 24 3 6 0.17 1 0 1
................................................................................................TTCCTGTGCTGCTCTCGGTAG................................................................. 21 1 6 0.17 1 1 0
.............................................................................................AAATTCCTGTGCTGTTCTCGGTA.................................................................. 23 2 6 0.17 1 0 1
......................................................................................................TGCTGTTCTCGGTAG................................................................. 15 0 6 0.17 1 1 0
...............................................................................................ATTACTGTGCTGTTCTCGGTA.................................................................. 21 2 6 0.17 1 0 1
.....................................................................................................GTGCTGTTCTCGGTA.................................................................. 15 0 6 0.17 1 0 1
............................................................................................ATGCTTCCTGTGCTGTTCTCGGTA.................................................................. 24 3 6 0.17 1 0 1
................................................................................................TTCCTGTGCTGTTCCCGGTAGT................................................................ 22 2 6 0.17 1 1 0
.....................................................................................................GTGCTGTTCTCGGTAGAC............................................................... 18 1 7 0.14 1 1 0
.....................................................................................................GTGCTGTTCTCGGTAGAA............................................................... 18 1 7 0.14 1 1 0
...................................................................................................CTGTGCTGTTCTCGGTAGC................................................................ 19 1 7 0.14 1 1 0
.............................................................................................AAATTCCTGTGCTGTTCTCGGT................................................................... 22 2 7 0.14 1 0 1
..........................................................................................AGGGGCTTCCTGTGCTGTTCTCGGT................................................................... 25 3 7 0.14 1 0 1
.........................................GCATGCTGTGTGCAGTGCC.......................................................................................................................... 19 0 7 0.14 1 1 0
............................................................................................AGCTTTCCTGTGCTGTTCTCGGTA.................................................................. 24 3 8 0.13 1 0 1
................................................................CTAGAACAGCAATGGAGT.................................................................................................... 18 0 8 0.13 1 0 1
...................................................................................................CTGGGCTGTTCTCGGTAGAT............................................................... 20 2 8 0.13 1 1 0
...................................................................................................CTGTGCTGTTCTCGGTAA................................................................. 18 1 9 0.11 1 1 0
..................................................................AGAACAGCAATGGAGT.................................................................................................... 16 0 10 0.10 1 0 1
..................................................................................................ACTGTGCTGTTCTCGGT................................................................... 17 1 20 0.10 2 1 1
.....................................................................................................GTGCTGTTCTCGGTAT................................................................. 16 1 20 0.10 2 2 0
...............................................................................................ATTCCTGGGCTGTTCTCGGT................................................................... 20 2 12 0.08 1 0 1
.............................................................................................AGATTCCTGTGCTGTTCTCGGC................................................................... 22 3 14 0.07 1 1 0
.....................................................................................................GGGCTGTTCTCGGTAGAAT.............................................................. 19 2 15 0.07 1 1 0
...............................................................................................ATTCCTGTGCTGTTCTCGGA................................................................... 20 2 15 0.07 1 0 1
...............................................................................................ATTACTGTGCTGTTCTCGGT................................................................... 20 2 15 0.07 1 0 1
....................................................................................................AGTGCTGTTCTCGGTAGAT............................................................... 19 2 18 0.06 1 1 0
...............................................................................................ATTTCTGTGCTGTTCTCGGT................................................................... 20 2 19 0.05 1 0 1
.......................................................................................................GCTGTTCTCGGTAGT................................................................ 15 1 20 0.05 1 1 0
................................................................................................TTCCTGTGCTGTTCTCTGCA.................................................................. 20 2 20 0.05 1 0 1
.....................................................................................................GGGCTGTTCTCGGTAGAT............................................................... 18 2 20 0.05 1 1 0
......................................................................................................TGCTGTTCTCGGTAGT................................................................ 16 1 20 0.05 1 1 0

Anti-sense strand reads

CGACCCCCACCCACCTCGGACTACCTGGTCCTGCAGGTGCACGTACGACACACGTCACGGGACGGATCTTGTCGTTACCTCACACTTAGTTACTGGAAGGACACGACAAGAGCCATCTCATACCGAGTAGTTATAGTAGGAAACACAACGGTAGACCTGACCTTCATCCTAACCTAGACGTC
*************************************************..(((.((.((((.(((((.(((((((((..((((.((.........)).))))..))))))))).))))).)))).)).)))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM