ID:

ocu_2

 Coordinate:

chrUn0002:10717470-10717563 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.7 -31.1 -31.1

Sense Strand Reads

TCCAAGGAACACGGGTGAATGTTTAGGCAGGGATGCAATGATTACACCCACATTCTGTCTGTGGTACTATACGGCAGAGAGTGACAATCATGTATAATTTAAAATGATTGACACCTCTGTTAGTGAAGTAGTGCATGACATATGCAGCGTACATTATGACATTTTGGGTGCATTGGGACCACTTATTTACATGC
******************************************************..(((((((.((((.((((((((((.(((.(((((((............))))))).)))))))))).))).)))).)))).)))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
.....................................................................TACGGCAGAGAGTGACAATCAT....................................................................................................... 22 0 1 78.00 78 52 26
.....................................................................TACGGCAGAGAGTGACAATCA........................................................................................................ 21 0 1 58.00 58 38 20
.....................................................................TACGGCAGAGAGTGACAATC......................................................................................................... 20 0 1 48.00 48 38 10
.....................................................................TACGGCAGAGAGTGACAAT.......................................................................................................... 19 0 1 27.00 27 16 11
........................................................................................................TGATTGACACCTCTGTTAGT...................................................................... 20 0 1 19.00 19 7 12
........................................................................................................TGATTGACACCTCTGTTAGTGT.................................................................... 22 1 1 15.00 15 0 15
....................................................................ATACGGCAGAGAGTGACAATCA........................................................................................................ 22 0 1 13.00 13 13 0
.....................................................................TACGGCAGAGAGTGACAATCATG...................................................................................................... 23 0 1 9.00 9 0 9
......................................................................ACGGCAGAGAGTGACAATCAT....................................................................................................... 21 0 1 9.00 9 9 0
..........................................................................................................ATTGACACCTCTGTTAGTGAAT.................................................................. 22 1 1 9.00 9 0 9
........................................................................................................TGATTGACACCTCTGTTAGTGAT................................................................... 23 1 1 8.00 8 0 8
....................................................................ATACGGCAGAGAGTGACAATCAT....................................................................................................... 23 0 1 8.00 8 7 1
......................................................................ACGGCAGAGAGTGACAATCA........................................................................................................ 20 0 1 7.00 7 7 0
........................................................................................................TGATTGACACCTCTGTTAGTGA.................................................................... 22 0 1 6.00 6 0 6
.....................................................................TACGGCAGAGAGTGACAATCATGT..................................................................................................... 24 0 1 4.00 4 1 3
......................................................................ACGGCAGAGAGTGACAAT.......................................................................................................... 18 0 1 4.00 4 4 0
.....................................................................TACGGCAGAGAGTGACAATCATT...................................................................................................... 23 1 1 3.00 3 0 3
.....................................................................TACGGCAGAGAGGGACAATC......................................................................................................... 20 1 1 3.00 3 3 0
.....................................................................TACGGCAGAGAGGGACAATCAT....................................................................................................... 22 1 1 3.00 3 2 1
.......................................................................................................ATGATTGACACCTCTGTTAGT...................................................................... 21 0 1 2.00 2 0 2
.............................................................................................................GACACCTCTGTTAGTGAA................................................................... 18 0 1 2.00 2 0 2
....................................................................ATACGGCAGAGAGTGACAAT.......................................................................................................... 20 0 1 2.00 2 2 0
.....................................................................TACGGCAGAGAGTGATAATCAT....................................................................................................... 22 1 1 2.00 2 0 2
.....................................................................TACGGCAGAGAGTGACAA........................................................................................................... 18 0 1 2.00 2 1 1
.....................................................................TACGGCAGATAGTGACAATC......................................................................................................... 20 1 1 2.00 2 1 1
....................................................................ATACGGCAGAGAGTGACAATC......................................................................................................... 21 0 1 2.00 2 2 0
..................................................................GAATACGGCAGAGAGTGACAATCA........................................................................................................ 24 2 1 1.00 1 1 0
.....................................................................TACGGCAGAGAGTGACAATA......................................................................................................... 20 1 1 1.00 1 0 1
..................................................................GAATACGGCAGAGAGTGACAATC......................................................................................................... 23 2 1 1.00 1 1 0
.....................................................................TACGGCAGAGAGTGACAATCATTGG.................................................................................................... 25 3 1 1.00 1 1 0
.....................................................................TACGGCGGAGAGTGACAATCAT....................................................................................................... 22 1 1 1.00 1 0 1
...................................................................AATACGGCAGAGAGTGACAAT.......................................................................................................... 21 1 1 1.00 1 0 1
.....................................................................TACGGCAGAGAGTGACAATCATGAC.................................................................................................... 25 2 1 1.00 1 1 0
....................................................................ATACGCCAGAGAGTGACAATC......................................................................................................... 21 1 1 1.00 1 1 0
.........................................................................................................GATTGACACCTCTGTTAGT...................................................................... 19 0 1 1.00 1 0 1
......................................................................ACGGAAGAGAGTGACAATC......................................................................................................... 19 1 2 1.00 2 2 0
.....................................................................TACGGCCGAGAGTGACAATCAT....................................................................................................... 22 1 1 1.00 1 1 0
....................................................................ATACGGCAGAGAGTGACAATCATGTCGTA................................................................................................. 29 3 1 1.00 1 1 0
....................................................................GTACGGCAGAGAGTGACAATC......................................................................................................... 21 1 1 1.00 1 1 0
.......................................................................................................ATGATTGCCACCTCTGTTAGT...................................................................... 21 1 1 1.00 1 0 1
.....................................................................TATGGCAGAGAGTGACAATCA........................................................................................................ 21 1 1 1.00 1 1 0
.....................................................................TACGGCAGAGAGTGACAATCATGTATA.................................................................................................. 27 0 1 1.00 1 1 0
.....................................................................TACGGCAGAGAGTGACAATCATTTG.................................................................................................... 25 2 1 1.00 1 1 0
........................................................................................................TGATTGACACCTCTGTTAGTG..................................................................... 21 0 1 1.00 1 0 1
...........................................................................AGAGAGTGACAATCAT....................................................................................................... 16 0 2 1.00 2 2 0
......................................................................ACGGCAGAGGGTGACAATCA........................................................................................................ 20 1 1 1.00 1 1 0
........................................................................................................TGATTAACACCTCTGTTAGT...................................................................... 20 1 1 1.00 1 0 1
..........................................................................CAGAGAGTGACAATCATG...................................................................................................... 18 0 2 1.00 2 0 2
......................................................................ACGGCAGAGAGTGACAA........................................................................................................... 17 0 1 1.00 1 1 0
.....................................................................TACGGCAGAGAGTGACAATCATCGC.................................................................................................... 25 3 1 1.00 1 1 0
....................................................................ATACGGCCGAGAGTGACAATCA........................................................................................................ 22 1 1 1.00 1 1 0
.....................................................................TACGGCAGAGAGTGACA............................................................................................................ 17 0 1 1.00 1 0 1
.....................................................................TACGGCAGAGAGTTACAATCAT....................................................................................................... 22 1 1 1.00 1 0 1
.....................................................................TACGGCAGAGAGTGAC............................................................................................................. 16 0 2 0.50 1 0 1
..........................................................................CAGAGAGTGACAATCAT....................................................................................................... 17 0 2 0.50 1 0 1
..........................................................................CAGAGAGTGACAATC......................................................................................................... 15 0 8 0.38 3 3 0
............................................................................GAGAGTGACAATCAT....................................................................................................... 15 0 4 0.25 1 1 0
......................................................................AAGGCAGAGAGTGACAATCA........................................................................................................ 20 1 5 0.20 1 1 0
.....................................................................GACGCCAGAGAGTGACAATCA........................................................................................................ 21 2 6 0.17 1 1 0

Anti-sense strand reads

AGGTTCCTTGTGCCCACTTACAAATCCGTCCCTACGTTACTAATGTGGGTGTAAGACAGACACCATGATATGCCGTCTCTCACTGTTAGTACATATTAAATTTTACTAACTGTGGAGACAATCACTTCATCACGTACTGTATACGTCGCATGTAATACTGTAAAACCCACGTAACCCTGGTGAATAAATGTACG
*******************************************************..(((((((.((((.((((((((((.(((.(((((((............))))))).)))))))))).))).)))).)))).)))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:26 AM