ID:

ocu_18

 Coordinate:

chrUn0002:9256418-9256498 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.8 -37.3
mature
  1. chrUn0002:9246701-9246722 -
  2. chrUn0002:9253158-9253179 -
  3. chrUn0002:9256430-9256451 -
  4. chrUn0002:9272391-9272412 -
  5. chrUn0002:9286959-9286980 -
star
  1. chrUn0002:9246737-9246757 -
  2. chrUn0002:9253194-9253214 -
  3. chrUn0002:9256466-9256486 -
  4. chrUn0002:9272427-9272447 -
  5. chrUn0002:9286995-9287015 -

Sense Strand Reads

GAAATCTGTGGGGGCGAACCTGATGGGACAGGACCTCCATGTGCATGCTGTGTGCAGTGCCCTGCCTAGAACAGCAATGGAGTGGGAATCCATGACCTTCCTGTGCTGTTCTCGGTAGAGTAAGGCTCATCAATATCATCCTCTGTGTTGCCCTCTGGACTGGAAGTGAGGTTGGATCTGC
***********************************************..(((.((..(((.(((((.(((((((((..((((.((..........))))))..))))))))).))))).)))..)).)))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.................................................................................................TTCCTGTGCTGTTCTCGGTAGA.............................................................. 22 0 5 68.00 340 293 47
................................................................................................ATTCCTGTGCTGTTCTCGGT................................................................. 20 1 5 43.40 217 0 217
.................................................................................................TTCCTGTGCTGTTCTCGGTA................................................................ 20 0 5 31.40 157 21 136
.................................................................................................TTCCTGTGCTGTTCTCGGTAGAT............................................................. 23 1 5 26.60 133 131 2
.................................................................................................TTCCTGTGCTGTTCTCGGTAG............................................................... 21 0 5 25.80 129 95 34
.................................................................................................TTCCTGTGCTGTTCTCGGT................................................................. 19 0 5 22.00 110 81 29
....................................................................................................CTGTGCTGTTCTCGGTAGAT............................................................. 20 1 5 11.20 56 56 0
................................................................................................ATTCCTGTGCTGTTCTCGGTA................................................................ 21 1 5 9.40 47 0 47
.................................................................................................TTCCTGTGCTGTTCTCGGTAGAA............................................................. 23 1 5 9.20 46 44 2
.................................................................................................TTCCTGTGCTGTTCTCGGTAGT.............................................................. 22 1 6 7.83 47 42 5
..............................................................TGCCTAGAACAGCAATGGAGT.................................................................................................. 21 0 5 7.80 39 12 27
......................................................................................................GTGCTGTTCTCGGTAGAT............................................................. 18 1 6 7.17 43 43 0
....................................................................................................CTGTGCTGTTCTCGGTAGT.............................................................. 19 1 6 7.00 42 42 0
....................................................................................................CTGTGCTGTTCTCGGTAGA.............................................................. 19 0 5 6.40 32 32 0
......................................................................................................GTGCTGTTCTCGGTAGA.............................................................. 17 0 5 6.00 30 30 0
....................................................................................................CTGTGCTGTTCTCGGTAG............................................................... 18 0 5 6.00 30 29 1
....................................................................................................CTGTGCTGTTCTCGGT................................................................. 16 0 5 5.60 28 28 0
..................................................................................................TCCTGTGCTGTTCTCGGTAGAT............................................................. 22 1 5 3.80 19 18 1
.....................................................................................................TGTGCTGTTCTCGGTAGAT............................................................. 19 1 5 2.60 13 13 0
..................................................................................................TCCTGTGCTGTTCTCGGTAGA.............................................................. 21 0 5 2.40 12 7 5
.....................................................................................................TGTGCTGTTCTCGGTAGA.............................................................. 18 0 5 2.20 11 11 0
......................................................................................................GTGCTGTTCTCGGTAG............................................................... 16 0 5 2.20 11 11 0
.................................................................................................TTCCTGTGCTGTTCTCGGTAGAAT............................................................ 24 1 5 2.00 10 10 0
........................................................................................................GCTGTTCTCGGTAGAT............................................................. 16 1 14 1.50 21 21 0
..............................................................TGCCTAGAACAGCAATGGAGTGGT............................................................................................... 24 1 2 1.50 3 1 2
..............................................................TGCCTAGAACAGCAATGGAGTGG................................................................................................ 23 0 2 1.50 3 2 1
..................................................................................................TCCTGTGCTGTTCTCGGT................................................................. 18 0 5 1.40 7 3 4
......................................................................................................GTGCTGTTCTCGGTAGT.............................................................. 17 1 7 1.29 9 9 0
.....................................................................................................TGTGCTGTTCTCGGTAG............................................................... 17 0 5 1.20 6 6 0
.................................................................................................TTCCTGTGCTGTTCTCGG.................................................................. 18 0 5 1.20 6 6 0
................................................................................................CTTCCTGTGCTGTTCTCGGTAG............................................................... 22 0 5 1.20 6 6 0
..................................................................................................TCCTGTGCTGTTCTCGGTA................................................................ 19 0 5 1.20 6 0 6
.....................................................................................................TGTGCTGTTCTCGGTAGT.............................................................. 18 1 7 1.00 7 7 0
.................................................................................................TTCCTGTGCTGTTCTCGGTAGAAA............................................................ 24 2 5 1.00 5 5 0
....................................................................................................CTGTGCTGTTCTCGGTAGAA............................................................. 20 1 5 1.00 5 5 0
.................................................................................................TTCCTGTGCTGTTCTCGGTAGAGGAA.......................................................... 26 1 2 1.00 2 2 0
................................................................................................ATTCCTGTGCTGTTCTCGGTAGA.............................................................. 23 1 5 1.00 5 2 3
..............................................................................................AAATTCCTGTGCTGTTCTCGGTAG............................................................... 24 2 5 1.00 5 5 0
..................................................................................................TCCTGTGCTGTTCTCGGTAGT.............................................................. 21 1 6 0.83 5 5 0
................................................................................................ATTCCTGTGCTGTTCTCGGTAG............................................................... 22 1 5 0.80 4 1 3
.................................................................................................TTCCTGTGCTGTTCTCGGTAT............................................................... 21 1 5 0.80 4 4 0
..................................................................................................TCCTGTGCTGTTCTCGGTAGAA............................................................. 22 1 5 0.80 4 4 0
..............................................................TGCCTAGAACAGCAATGGAGTG................................................................................................. 22 0 5 0.80 4 1 3
........................................................................................................GCTGTTCTCGGTAGA.............................................................. 15 0 5 0.80 4 4 0
..........................................GCATGCTGTGTGCAGTGCCC....................................................................................................................... 20 0 7 0.71 5 5 0
..............................................................................................AGATTCCTGTGCTGTTCTCGGT................................................................. 22 2 6 0.67 4 3 1
..............................................................TGCCTAGAACAGCAATGGAG................................................................................................... 20 0 5 0.60 3 0 3
.................................................................................................TTCCTGTGCTGTTCTCGGTAA............................................................... 21 1 5 0.60 3 3 0
.................................................................................................TTCCTGTGCTGTTCTCGGTAGAC............................................................. 23 1 5 0.60 3 3 0
.....................................................................................................TGTGCTGTTCTCGGTAGAAT............................................................ 20 1 5 0.60 3 3 0
................................................................................................ATTCCTGTGCTGTTCTCGGTAGAA............................................................. 24 2 5 0.60 3 2 1
.................................................................................................TTCCTGTGCTGTTCTCGGTAGATT............................................................ 24 1 5 0.60 3 3 0
.................................................................................................TTCCTGTGCTGTTCTCGGTAAA.............................................................. 22 1 5 0.60 3 3 0
.................................................................................................TTCCTGTGCTGTTCTCGGTAGTT............................................................. 23 2 6 0.50 3 3 0
.................................................................................................TTCCTGTGCTGTTCTCGGA................................................................. 19 1 6 0.50 3 3 0
................................................................................................ATTCCTGTGCTGTTCTCGGTAGT.............................................................. 23 2 6 0.50 3 0 3
.....................................................................................................TGTGCTGTTCTCGGTAGAA............................................................. 19 1 5 0.40 2 2 0
...............................................................GCCTAGAACAGCAATGGAGT.................................................................................................. 20 0 5 0.40 2 0 2
....................................................................................................CTGTGCTGTTCTCGGTA................................................................ 17 0 5 0.40 2 1 1
..................................................................................................TCCTGTGCTGTTCTCGGTAG............................................................... 20 0 5 0.40 2 1 1
...................................................................................................CCTGTGCTGTTCTCGGT................................................................. 17 0 5 0.40 2 2 0
..............................................................................................AGTTTCCTGTGCTGTTCTCGGT................................................................. 22 2 5 0.40 2 0 2
...........................................................................................AGGGTCTTCCTGTGCTGTTCTCGGT................................................................. 25 3 5 0.40 2 0 2
................................................................................................ATTCCTGTGCTGTTCTCGGTAGAT............................................................. 24 2 5 0.40 2 2 0
...........................................................................................AGGGCCTTCCTGTGCTGTTCTCGGTA................................................................ 26 2 5 0.40 2 0 2
..............................................................TGCCTAGAACAGCAATGGA.................................................................................................... 19 0 5 0.40 2 0 2
.................................................................................................TTCCTGTGCTGTTCTCGGCAGA.............................................................. 22 1 5 0.40 2 2 0
.................................................................................................TTCCTGTGCTGTTCTCGGC................................................................. 19 1 5 0.40 2 2 0
.................................................................................................TTCCTGTGCTGTTCTC.................................................................... 16 0 14 0.36 5 5 0
.....................................................................................................TGTGCTGTTCTCGGT................................................................. 15 0 9 0.33 3 2 1
...........................................................................................AGCAGCTTCCTGTGCTGTTCTCGGT................................................................. 25 3 6 0.33 2 0 2
....................................................................................................CTGTGCTGTTCTCGGTAT............................................................... 18 1 7 0.29 2 2 0
...............................................................................................AGTTCCTGTGCTGTTCTCGGT................................................................. 21 2 9 0.22 2 2 0
..........................................GCATGCTGTGTGCAGTG.......................................................................................................................... 17 0 9 0.22 2 2 0
...........................................................................................AGGCCCTTCCTGTGCTGTTCTCGGT................................................................. 25 2 5 0.20 1 0 1
................................................................................................TTTCCTGTGCTGTTCTCGGT................................................................. 20 1 5 0.20 1 0 1
....................................................................................................CTTTGCTGTTCTCGGTAGA.............................................................. 19 1 5 0.20 1 1 0
...........................................................................................AGAACCTTCCTGTGCTGTTCTCGGTAGG.............................................................. 28 3 5 0.20 1 0 1
................................................................................................ATTCATGTGCTGTTCTCGGTAGA.............................................................. 23 2 5 0.20 1 0 1
.................................................................................................TTACTGTGCTGTTCTCGGTA................................................................ 20 1 5 0.20 1 0 1
.................................................................................................TTCCTGTGCTGTTCTTGGTAGA.............................................................. 22 1 5 0.20 1 1 0
....................................................................................................CTGTGCTGTTCTCGGTAGATTT........................................................... 22 2 5 0.20 1 1 0
..............................................................................................CACTTCCTGTGCTGTTCTCGGTA................................................................ 23 2 5 0.20 1 0 1
......................................................................................................GTGCTGTTCTCGGTAGAG............................................................. 18 0 5 0.20 1 1 0
..................................................................................................TCCTGTGCTGTTCTCGGTCGAT............................................................. 22 2 5 0.20 1 1 0
.................................................................................................TCCCTGTGCTGTTCTCGGTAGA.............................................................. 22 1 5 0.20 1 1 0
...........................................................................................AAGCCATTCCTGTGCTGTTCTCGGTA................................................................ 26 3 5 0.20 1 0 1
...........................................................................................AGAAGCTTCCTGTGCTGTTCTCGGTAG............................................................... 27 3 5 0.20 1 0 1
..............................................................CGCCTAGAACAGCAATGGAGT.................................................................................................. 21 1 5 0.20 1 0 1
.............................................................................................ACTCTTCCTGTGCTGTTCTCGGTAG............................................................... 25 3 5 0.20 1 0 1
..........................................................GGAATGCCTAGAACAGCAATGGAGT.................................................................................................. 25 3 5 0.20 1 0 1
.................................................................................................CTCCTGTGCTGTTCTCGGTA................................................................ 20 1 5 0.20 1 0 1
.............................................................................................AGCCTTCCTGTGCTGTTCTCGGTA................................................................ 24 2 5 0.20 1 0 1
...........................................................................................AGCACATTCCTGTGCTGTTCTCGGTA................................................................ 26 3 5 0.20 1 0 1
...............................................................................................ACTTCCTGTGCTGTTCTCGGTA................................................................ 22 1 5 0.20 1 0 1
.............................................................................................GGCCTTCCTGTGCTGTTCTCGGTA................................................................ 24 1 5 0.20 1 0 1
...........................................................................................AGCGCCTTCCTGTGCTGTTCTCGGT................................................................. 25 3 5 0.20 1 0 1
...........................................................................................ATGCCCTTCCTGTGCTGTTCTCGGTA................................................................ 26 1 5 0.20 1 0 1
...........................................................................................ATGCACTTCCTGTGCTGTTCTCGGTA................................................................ 26 2 5 0.20 1 0 1
....................................................................................................CTGTGCTGTTCTCGGTAGAC............................................................. 20 1 5 0.20 1 1 0
...........................................................................................AGGCGCTTCCTGTGCTGTTCTCGGT................................................................. 25 3 5 0.20 1 0 1
.................................................................................................TTCCTGGGCTGTTCTCGGTAG............................................................... 21 1 5 0.20 1 0 1
...............................................................................................TGTTCCTGTGCTGTTCTCGGTA................................................................ 22 2 5 0.20 1 0 1
................................................................................................ATTCCTGTGCTGTTCTCGGTAA............................................................... 22 2 5 0.20 1 0 1
...........................................................................................ATTAGATTCCTGTGCTGTTCTCGGTA................................................................ 26 3 5 0.20 1 0 1
.................................................................................................TTCCTGTACTGTTCTCGGTA................................................................ 20 1 5 0.20 1 0 1
................................................................................................CTTCCTGTGCTGTTCTCGGTA................................................................ 21 0 5 0.20 1 0 1
...............................................................................................CCTTCCTGTGCTGTTCTCGGTA................................................................ 22 0 5 0.20 1 0 1
....................................................................................................CTGTGCTGTTCTCGGTAGAAT............................................................ 21 1 5 0.20 1 1 0
.................................................................................................TTCCTGTTCTGTTCTCGGTA................................................................ 20 1 5 0.20 1 0 1
.................................................................................................TTCCTGTGCTGTTCTCGATAGA.............................................................. 22 1 5 0.20 1 1 0
.................................................................................................TTCCTGAGCTGTTCTCGGTAGAGGA........................................................... 25 2 5 0.20 1 1 0
............................................................AATGCCTAGAACAGCAATGGAGTG................................................................................................. 24 2 5 0.20 1 0 1
.................................................................................................TTCCTGTTCTGTTCTCGGTAGA.............................................................. 22 1 5 0.20 1 0 1
..............................................................................................GATTTCCTGTGCTGTTCTCGGTAGA.............................................................. 25 3 5 0.20 1 0 1
................................................................................................CTTCCTGTGCTGTTCTCGGTAGA.............................................................. 23 0 5 0.20 1 1 0
.................................................................................................TTCCTGTGCCGTTCTCGGTAG............................................................... 21 1 5 0.20 1 1 0
............................................................................................AGAGCTTCCTGTGCTGTTCTCGGTAG............................................................... 26 2 5 0.20 1 0 1
...........................................................................................ACAAGCTTCCTGTGCTGTTCTCGGT................................................................. 25 3 5 0.20 1 0 1
.................................................................................................TTCCTGTGCTGTTCTCGGTATAT............................................................. 23 2 5 0.20 1 1 0
..............................................................................................AGCTTCCTGTGCTGTTCTCGGT................................................................. 22 1 5 0.20 1 0 1
......................................................................................................GTGCTGTTCTCGGTAGAAT............................................................ 19 1 5 0.20 1 1 0
.................................................................................................TTCCTGTGCTTTTCTCGGTAG............................................................... 21 1 5 0.20 1 1 0
.............................................................................................AAGCTTCCTGTGCTGTTCTCGGT................................................................. 23 2 5 0.20 1 0 1
.................................................................................................TTCCTGTGCTGTTCTCGGTAAAAT............................................................ 24 2 5 0.20 1 1 0
....................................................................................................CTGTGCTGTTCTCGGCAGA.............................................................. 19 1 5 0.20 1 1 0
.................................................................................................TTCCTGCGCTGTTCTCGGTAGATT............................................................ 24 2 5 0.20 1 1 0
...........................................................................................AGGCCCTTCCTGTGCTGTTCTCGGTA................................................................ 26 2 5 0.20 1 0 1
............................................................................................GGAAATTCCTGTGCTGTTCTCGGTAGA.............................................................. 27 3 5 0.20 1 0 1
.................................................................................................TTCATGTGCTGTTCTCGGTAG............................................................... 21 1 5 0.20 1 0 1
................................................................................................CTTCCTGTGCTGTTCTCGGT................................................................. 20 0 5 0.20 1 1 0
.................................................................................................TTCCTGTGCTGTTCTCGGTAGC.............................................................. 22 1 5 0.20 1 1 0
............................................................................................TGAGTTTCCTGTGCTGTTCTCGGTA................................................................ 25 2 5 0.20 1 0 1
...................................................................................................CCTGTGCTGTTCTCGGTAGATT............................................................ 22 1 5 0.20 1 1 0
....................................................................................................CTGTGCTGTTCTCGGTAGAG............................................................. 20 0 5 0.20 1 1 0
...............................................................................................AGTTCCTGTGCTGTTCTCGGTAGA.............................................................. 24 2 5 0.20 1 1 0
.................................................................................................CTCCTGTGCTGTTCTCGGTAG............................................................... 21 1 5 0.20 1 1 0
................................................................................................GTTCCTGTGCTGTTCTCGGT................................................................. 20 1 5 0.20 1 0 1
.................................................................................................TTCCTGTGCTGTTCTCGGTAGAGT............................................................ 24 0 5 0.20 1 1 0
...........................................................................................AGGTCCTTCCTGTGCTGTTCTCGGTA................................................................ 26 2 5 0.20 1 0 1
...........................................................................................AAGAGTTTCCTGTGCTGTTCTCGGT................................................................. 25 3 5 0.20 1 0 1
................................................................................................AGTCCTGTGCTGTTCTCGGTA................................................................ 21 2 5 0.20 1 0 1
.................................................................................................TTCCTGTGCTGCTCTCGGTAG............................................................... 21 1 6 0.17 1 1 0
..............................................................................................CCATTCCTGTGCTGTTCTCGGT................................................................. 22 2 6 0.17 1 0 1
.......................................................................................................TGCTGTTCTCGGTAG............................................................... 15 0 6 0.17 1 1 0
.................................................................................................TTCCTGTGCTGTTCCCGGTAGT.............................................................. 22 2 6 0.17 1 1 0
..............................................................................................AAATTCCTGTGCTGTTCTCGGTA................................................................ 23 2 6 0.17 1 0 1
...........................................................................................AGGGCCTTCCTGTGCCGTTCTCGGT................................................................. 25 3 6 0.17 1 0 1
......................................................................................................GTGCTGTTCTCGGTA................................................................ 15 0 6 0.17 1 0 1
.............................................................................................ACTCTTCCTGTGCTGTTCTCGGTA................................................................ 24 3 6 0.17 1 0 1
.............................................................................................ATGCTTCCTGTGCTGTTCTCGGTA................................................................ 24 3 6 0.17 1 0 1
.............................................................................................TAGATTCCTGTGCTGTTCTCGGTA................................................................ 24 3 6 0.17 1 0 1
................................................................................................ATTACTGTGCTGTTCTCGGTA................................................................ 21 2 6 0.17 1 0 1
..........................................GCATGCTGTGTGCAGTGCC........................................................................................................................ 19 0 7 0.14 1 1 0
...........................................................................................AGGGGCTTCCTGTGCTGTTCTCGGT................................................................. 25 3 7 0.14 1 0 1
......................................................................................................GTGCTGTTCTCGGTAGAA............................................................. 18 1 7 0.14 1 1 0
....................................................................................................CTGTGCTGTTCTCGGTAGC.............................................................. 19 1 7 0.14 1 1 0
......................................................................................................GTGCTGTTCTCGGTAGAC............................................................. 18 1 7 0.14 1 1 0
..............................................................................................AAATTCCTGTGCTGTTCTCGGT................................................................. 22 2 7 0.14 1 0 1
....................................................................................................CTGGGCTGTTCTCGGTAGAT............................................................. 20 2 8 0.13 1 1 0
.............................................................................................AGCTTTCCTGTGCTGTTCTCGGTA................................................................ 24 3 8 0.13 1 0 1
.................................................................CTAGAACAGCAATGGAGT.................................................................................................. 18 0 8 0.13 1 0 1
....................................................................................................CTGTGCTGTTCTCGGTAA............................................................... 18 1 9 0.11 1 1 0
......................................................................................................GTGCTGTTCTCGGTAT............................................................... 16 1 20 0.10 2 2 0
...................................................................AGAACAGCAATGGAGT.................................................................................................. 16 0 10 0.10 1 0 1
...................................................................................................ACTGTGCTGTTCTCGGT................................................................. 17 1 20 0.10 2 1 1
................................................................................................ATTCCTGGGCTGTTCTCGGT................................................................. 20 2 12 0.08 1 0 1
..............................................................................................AGATTCCTGTGCTGTTCTCGGC................................................................. 22 3 14 0.07 1 1 0
................................................................................................ATTACTGTGCTGTTCTCGGT................................................................. 20 2 15 0.07 1 0 1
......................................................................................................GGGCTGTTCTCGGTAGAAT............................................................ 19 2 15 0.07 1 1 0
................................................................................................ATTCCTGTGCTGTTCTCGGA................................................................. 20 2 15 0.07 1 0 1
.....................................................................................................AGTGCTGTTCTCGGTAGAT............................................................. 19 2 18 0.06 1 1 0
................................................................................................ATTTCTGTGCTGTTCTCGGT................................................................. 20 2 19 0.05 1 0 1
.................................................................................................TTCCTGTGCTGTTCTCTGCA................................................................ 20 2 20 0.05 1 0 1
......................................................................................................GGGCTGTTCTCGGTAGAT............................................................. 18 2 20 0.05 1 1 0
........................................................................................................GCTGTTCTCGGTAGT.............................................................. 15 1 20 0.05 1 1 0
.......................................................................................................TGCTGTTCTCGGTAGT.............................................................. 16 1 20 0.05 1 1 0

Anti-sense strand reads

CTTTAGACACCCCCGCTTGGACTACCCTGTCCTGGAGGTACACGTACGACACACGTCACGGGACGGATCTTGTCGTTACCTCACCCTTAGGTACTGGAAGGACACGACAAGAGCCATCTCATTCCGAGTAGTTATAGTAGGAGACACAACGGGAGACCTGACCTTCACTCCAACCTAGACG
***********************************************..(((.((..(((.(((((.(((((((((..((((.((..........))))))..))))))))).))))).)))..)).)))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM