ID:

ocu_17

 Coordinate:

chrUn0002:9259715-9259800 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.2 -36.1
mature
  1. chrUn0002:9249664-9249684 -
  2. chrUn0002:9259766-9259786 -
star

Sense Strand Reads

ATCTTTGGAGGGGGGTGAAGTCTGGTGGGCCAGGACGTCCATGTGCATGCTGTGTGCAGTGCCCTACCTAGAACAGCAACGGAGTGTGAATCCATGACCTTCCTGTGCTGCTCTGGGTAGAGTACAGCTCATCAATATCATCCTTTGTGTTGCCCTCTGGACTGGAAGTGGGGGTTGGATCTGCGG
*************************************************..(((.((.((((.(((((((((.(((((..((((.((.........)).))))..))))).))))))))).)))).)).)))......************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
................................................................TACCTAGAACAGCAACGGAGT..................................................................................................... 21 0 2 117.00 234 1 233
....................................................................................................TCCTGTGCTGCTCTGGGTAGAGT............................................................... 23 0 1 62.00 62 62 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAG................................................................ 22 0 1 26.00 26 25 1
....................................................................................................TCCTGTGCTGCTCTGGGTAG.................................................................. 20 0 1 18.00 18 18 0
...................................................................................................TTCCTGTGCTGCTCTGGGTAGAT................................................................ 23 1 1 18.00 18 18 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAT................................................................ 22 1 1 17.00 17 17 0
...................................................................................................TTCCTGTGCTGCTCTGGGTAG.................................................................. 21 0 1 16.00 16 15 1
...................................................................................................TTCCTGTGCTGCTCTGGGTAGA................................................................. 22 0 1 10.00 10 8 2
................................................................TACCTAGAACAGCAACGGAGTG.................................................................................................... 22 0 2 9.00 18 1 17
....................................................................................................TCCTGTGCTGCTCTGGGTAGAGAT.............................................................. 24 2 1 8.00 8 8 0
.................................................................ACCTAGAACAGCAACGGAGT..................................................................................................... 20 0 2 7.50 15 0 15
................................................................TACCTAGAACAGCAACGGAGTGT................................................................................................... 23 0 2 7.50 15 3 12
...............................................................ATACCTAGAACAGCAACGGAGT..................................................................................................... 22 1 2 7.00 14 0 14
.....................................................................................................CCTGTGCTGCTCTGGGTAGAG................................................................ 21 0 1 6.00 6 6 0
................................................................TACCTAGAACAGCAACGGAG...................................................................................................... 20 0 2 5.50 11 1 10
....................................................................................................TCCTGTGCTGCTCTGGGTAGA................................................................. 21 0 1 5.00 5 4 1
...................................................................CTAGAACAGCAACGGAGTGT................................................................................................... 20 0 2 4.50 9 9 0
.....................................................................AGAACAGCAACGGAGTGT................................................................................................... 18 0 2 4.00 8 8 0
.....................................................................................................CCTGTGCTGCTCTGGGTAGAGT............................................................... 22 0 1 4.00 4 4 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAGA............................................................... 23 1 1 4.00 4 3 1
..................................................................................................CTTCCTGTGCTGCTCTGGGTAG.................................................................. 22 0 1 3.00 3 3 0
........................................................................................................GTGCTGCTCTGGGTAGAG................................................................ 18 0 1 3.00 3 3 0
...................................................................................................TTCCTGTGCTGCTCTGGGT.................................................................... 19 0 2 3.00 6 4 2
......................................................................GAACAGCAACGGAGTGT................................................................................................... 17 0 2 2.50 5 5 0
....................................................................TAGAACAGCAACGGAGTGT................................................................................................... 19 0 2 2.50 5 5 0
......................................................................................................CTGTGCTGCTCTGGGTAG.................................................................. 18 0 1 2.00 2 2 0
..................................................................................................CTTCCTGTGCTGCTCTGGGTAGAT................................................................ 24 1 1 2.00 2 2 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAA................................................................ 22 1 1 2.00 2 1 1
.....................................................................................................CCTGTGCTGCTCTGGGTAGA................................................................. 20 0 1 2.00 2 2 0
...................................................................................................ATCCTGTGCTGCTCTGGGTAGAGT............................................................... 24 1 1 2.00 2 2 0
...................................................................................................TTCCTGTGCTGCTCTGGGTAGT................................................................. 22 1 2 2.00 4 4 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAGTT.............................................................. 24 1 1 2.00 2 0 2
....................................................................................................TCCTGTGCTGCTCTGGGTAGATT............................................................... 23 1 1 2.00 2 2 0
................................................................TACCTAGAACAGCAACGGA....................................................................................................... 19 0 2 2.00 4 0 4
....................................................................................................TCCTGTGCTGCTCTGGGTAGT................................................................. 21 1 2 1.50 3 3 0
.................................................................................................ACTTCCTGTGCTGCTCTGGGT.................................................................... 21 1 2 1.50 3 3 0
............................................................GGAATACCTAGAACAGCAACGGAGT..................................................................................................... 25 3 2 1.00 2 0 2
....................................................................TAGAACAGCAACGGAGT..................................................................................................... 17 0 2 1.00 2 2 0
......................................................................................................CTGTGCTGCTCTGGGTAGA................................................................. 19 0 1 1.00 1 1 0
.................................................................ACCTAGAACAGCAACGGAGTGT................................................................................................... 22 0 2 1.00 2 0 2
....................................................................................................TCCTGTGCTGCTCTGGATAGAG................................................................ 22 1 1 1.00 1 1 0
...............................................................CTACCTAGAACAGCAACGG........................................................................................................ 19 0 2 1.00 2 0 2
...................................................................CTAGAACAGCAACGGAGTGA................................................................................................... 20 1 2 1.00 2 2 0
...................................................................................................TTCCTGTGCTGCTCTGGGTA................................................................... 20 0 2 1.00 2 0 2
.................................................................ACCTAGAACAGCAACGGAGTG.................................................................................................... 21 0 2 1.00 2 0 2
...................................................................CTAGAACAGCAACGGAGT..................................................................................................... 18 0 2 1.00 2 0 2
...............................................................CTACCTAGAACAGCAACGGAG...................................................................................................... 21 0 2 1.00 2 0 2
...............................................................CTACCTAGAACAGCAACGGAGT..................................................................................................... 22 0 2 1.00 2 1 1
....................................................................................................TCCTGTGCTGCTCTGGGGAGAGT............................................................... 23 1 1 1.00 1 0 1
....................................................................................................CCCTGTGCTGCTCTGGGTAGAGT............................................................... 23 1 1 1.00 1 1 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAAT............................................................... 23 1 1 1.00 1 1 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAC................................................................ 22 1 1 1.00 1 1 0
....................................................................................................TCCTCTGCTGCTCTGGGTAGAGT............................................................... 23 1 1 1.00 1 1 0
.......................................................................................................TGTGCTGCTCTGGGTAGAG................................................................ 19 0 1 1.00 1 1 0
.......................................................................AACAGCAACGGAGTG.................................................................................................... 15 0 2 1.00 2 2 0
....................................................................................................TCCTGCGCTGCTCTGGGTAGAGA............................................................... 23 2 1 1.00 1 1 0
............................................GCATGCTGTGTGCAGTGCCC.......................................................................................................................... 20 0 7 0.71 5 5 0
...............................................................CTACCTAGAACAGCAACGGACT..................................................................................................... 22 1 2 0.50 1 0 1
....................................................................................................TCCTGTGCTGCTCTGGGTA................................................................... 19 0 2 0.50 1 0 1
..............................................................CCTACCTAGAACAGCAACGG........................................................................................................ 20 0 2 0.50 1 0 1
..............................................................AATACCTAGAACAGCAACGGAGT..................................................................................................... 23 2 2 0.50 1 0 1
................................................................TACCTAGAACCGCAACGGAGT..................................................................................................... 21 1 2 0.50 1 0 1
.................................................................................................ATTTCCTGTGCTGCTCTGGGTAGAT................................................................ 25 3 2 0.50 1 1 0
.................................................................................................ACTTCCTGTGCTGCTCTGGGTA................................................................... 22 1 2 0.50 1 0 1
..............................................................CCTACCTAGAACAGCAACGGA....................................................................................................... 21 0 2 0.50 1 0 1
................................................................TACCTAGAACAGCAACGGAGGGT................................................................................................... 23 1 2 0.50 1 0 1
.............................................................GAATACCTAGAACAGCAACGGAGT..................................................................................................... 24 3 2 0.50 1 0 1
................................................................TACCTAGCACAGCAACGGAGT..................................................................................................... 21 1 2 0.50 1 0 1
................................................................................................AGATTCCTGTGCTGCTCTGGGT.................................................................... 22 2 2 0.50 1 1 0
...................................................................CTAGAACAGCAACGGAGTG.................................................................................................... 19 0 2 0.50 1 1 0
................................................................TACCTAGAACAGCAACGG........................................................................................................ 18 0 2 0.50 1 0 1
.......................................................................................................TGTGCTGCTCTGGGTAG.................................................................. 17 0 2 0.50 1 1 0
................................................................TACCTAGAACAGCAACGGAGTGTGAA................................................................................................ 26 0 2 0.50 1 0 1
................................................................TATCTAGAACAGCAACGGAGT..................................................................................................... 21 1 2 0.50 1 0 1
....................................................................TAGAACAGCAACGGAGTG.................................................................................................... 18 0 2 0.50 1 0 1
.................................................................ACCTAGACCAGCAACGGAGTG.................................................................................................... 21 1 2 0.50 1 0 1
................................................................TACCTAGAACAGCAACGGAGCG.................................................................................................... 22 1 2 0.50 1 0 1
................................................................TACCTACAACAGCAACGGAGT..................................................................................................... 21 1 2 0.50 1 0 1
........................................................................................................GTGCTGCTCTGGGTAG.................................................................. 16 0 2 0.50 1 1 0
................................................................TACCTAGAACAGCAACGGAGG..................................................................................................... 21 1 2 0.50 1 0 1
.............................................................GCCTACCTAGAACAGCAACGGAGT..................................................................................................... 24 1 2 0.50 1 0 1
..................................................................CCTAGAACAGCAACGGAGT..................................................................................................... 19 0 2 0.50 1 0 1
...............................................................TTACCTAGAACAGCAACGGAGT..................................................................................................... 22 1 2 0.50 1 0 1
................................................................TACCTAGAACAGCAACGGAGTGA................................................................................................... 23 1 2 0.50 1 0 1
................................................................TACCTAGAACAGCAACGGAGTGTTT................................................................................................. 25 2 2 0.50 1 0 1
..................................................................................................CTTCCTGTGCTGCTCTGGGT.................................................................... 20 0 2 0.50 1 1 0
......................................................................................................CTGTGCTGCTCTGGGTAGT................................................................. 19 1 5 0.40 2 2 0
....................................................................................................TCCTGTGCTGCTCTGGGTAGAAAC.............................................................. 24 3 5 0.40 2 2 0
...................................................................................................TTCCTGTGCTGCTCTGGGTAAT................................................................. 22 2 5 0.40 2 2 0
................................................................TACCTAGAACAGCAACGGAGA..................................................................................................... 21 1 3 0.33 1 0 1
......................................................................GAACAGCAACGGAGT..................................................................................................... 15 0 3 0.33 1 0 1
...............................................................CTACGTAGAACAGCAACGGAGAC.................................................................................................... 23 3 4 0.25 1 0 1
...........................................................................................................CTGCTCTGGGTAGAGT............................................................... 16 0 4 0.25 1 1 0
............................................GCATGCTGTGTGCAGTG............................................................................................................................. 17 0 9 0.22 2 2 0
......................................................................................................CTGTGCTGCTCTGGGTA................................................................... 17 0 5 0.20 1 1 0
...................................................................................................TTCCTGTGCTGCTCTCGGTAG.................................................................. 21 1 6 0.17 1 1 0
........................................................................................................GTACTGCTCTGGGTAGAG................................................................ 18 1 6 0.17 1 1 0
............................................GCATGCTGTGTGCAGTGCC........................................................................................................................... 19 0 7 0.14 1 1 0
...................................................................................................ATCCTGTGCTGCTCTGGGT.................................................................... 19 1 8 0.13 1 1 0
............................................................................................................TGCTCTGGGTAGAGT............................................................... 15 0 10 0.10 1 1 0

Anti-sense strand reads

TAGAAACCTCCCCCCACTTCAGACCACCCGGTCCTGCAGGTACACGTACGACACACGTCACGGGATGGATCTTGTCGTTGCCTCACACTTAGGTACTGGAAGGACACGACGAGACCCATCTCATGTCGAGTAGTTATAGTAGGAAACACAACGGGAGACCTGACCTTCACCCCCAACCTAGACGCC
************************************************..(((.((.((((.(((((((((.(((((..((((.((.........)).))))..))))).))))))))).)))).)).)))......************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:27 AM