ID:

ocu_13

Coordinate:

chrUn0002:9285636-9285714 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-40.1	-39.7

mature

star

Sense Strand Reads

GTAGGGGGAAGGTAAATTCTCATGGCAGAGCACCTCCAAATTTATGCGGTGTGCATTGCTCTACCTAGAAGAGCACGGGAATATGTATAAATGAGCTTCCTGTACCCTTCTGGGTAGAGTATGGCTCACGTTCCAAAGGTCTATGTGCCCTCGAGATAGGGAGTCAAGATGGAGTGGCT ********************************************..(((.((..(((((((((((((((...((((((((((......)))...)))))))...)))))))))))))))..)).)))....********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM1528821 Adult_testes_Mili_IP	GSM1528820 Adult_testes
.............................................................TACCTAGAAGAGCACGGGAAT.................................................................................................	21	0	1	30.00	30	14	16
.............................................................TACCTAGAAGAGCACGGGA...................................................................................................	19	0	1	28.00	28	28	0
................................................................................................TTCCTGTACCCTTCTGGGTAGA.............................................................	22	0	2	18.50	37	0	37
.............................................................TACCTAGAAGAGCACGGGAA..................................................................................................	20	0	1	10.00	10	10	0
............................................................ATACCTAGAAGAGCACGGGAAT.................................................................................................	22	1	1	7.00	7	2	5
................................................................................................TTCCTGTACCCTTCTGGGTAGAT............................................................	23	1	2	6.50	13	0	13
.............................................................TACCTAGAAGAGCACGGGAATA................................................................................................	22	0	1	5.00	5	5	0
................................................................................................TTCCTGTACCCTTCTGGGTAG..............................................................	21	0	2	4.00	8	0	8
...................................................................................................CTGTACCCTTCTGGGTAGAT............................................................	20	1	2	3.00	6	0	6
..............................................................ACCTAGAAGAGCACGGGA...................................................................................................	18	0	1	3.00	3	3	0
................................................................................................TTCCTGTACCCTTCTGGGTAGAA............................................................	23	1	2	3.00	6	0	6
.................................................................................................TCCTGTACCCTTCTGGGTAGA.............................................................	21	0	2	2.00	4	0	4
................................................................................................TTCCTGTACCCTTCTGGGTAGAAAT..........................................................	25	3	2	2.00	4	0	4
.................................................................................................TCCTGTACCCTTCTGGGTAGAT............................................................	22	1	2	1.50	3	0	3
................................................................................................TTCCTGTACCCTTCTGGGTA...............................................................	20	0	3	1.33	4	3	1
...................................................................................................CTGTACCCTTCTGGGTAGA.............................................................	19	0	2	1.00	2	0	2
.............................................................TACCTAGAAGAGCACGGGAATTT...............................................................................................	23	1	1	1.00	1	1	0
.............................................................TACCTAGAAGAGCACGGGAATAGT..............................................................................................	24	2	1	1.00	1	1	0
.............................................................TACCTAGAAGAGCACGG.....................................................................................................	17	0	1	1.00	1	1	0
............................................................ATACCTAGAAGAGCACGGGA...................................................................................................	20	1	1	1.00	1	1	0
.............................................................TACCTAGAAGAGCACGGGAATTCGTA............................................................................................	26	2	1	1.00	1	1	0
............................................................ATACCTAGAAGAGCACGGGAATA................................................................................................	23	1	1	1.00	1	1	0
.............................................................TACCTAGAAGAGCACGGGAATAC...............................................................................................	23	1	1	1.00	1	0	1
...........................................................................AGGGAATATGTATAAATGAGCTTCCTGTACCC........................................................................	32	1	1	1.00	1	1	0
................................................................................................TTCCTGTACCCTTCTGGGTAGAGT...........................................................	24	0	2	1.00	2	0	2
.............................................................GACCTAGAAGAGCACGGGAAT.................................................................................................	21	1	1	1.00	1	1	0
..............................................................TCCTAGAAGAGCACGGGA...................................................................................................	18	1	1	1.00	1	1	0
................................................................CTAGAAGAGCACGGGA...................................................................................................	16	0	1	1.00	1	0	1
....................................................................................................TGTACCCTTCTGGGTAGAT............................................................	19	1	2	1.00	2	0	2
.............................................................TACCTAGAAGAGCACGGGAATAA...............................................................................................	23	1	1	1.00	1	1	0
.............................................................TACCTAGAAGAGCACGGGAAATCGTA............................................................................................	26	3	1	1.00	1	1	0
....................................................................................................TGTACCCTTCTGGGTAGA.............................................................	18	0	2	1.00	2	0	2
...............................................................................................ATTCCTGTACCCTTCTGGGTA...............................................................	21	1	3	0.67	2	2	0
................................................................................................TTCCTGTACCCTTCTGGGT................................................................	19	0	3	0.67	2	2	0
...................................................................................................CTGTACCCTTCTGGGTAGT.............................................................	19	1	2	0.50	1	0	1
................................................................................................TTCCTGTACCCTTCTGGGTAGAAA...........................................................	24	2	2	0.50	1	0	1
...................................................................................................CTGTACCCTTCTGGGTAG..............................................................	18	0	2	0.50	1	0	1
.............................................................TACCTAGAAGAGCACGGGATAT................................................................................................	22	3	3	0.33	1	1	0
....................................................................................................TGTACCCTTCTGGGTA...............................................................	16	0	3	0.33	1	0	1
..................................................................................................CCTGTACCCCTCTGGGTAGATT...........................................................	22	2	3	0.33	1	0	1
.....................................................................................................GTACCCTTCTGGGTAGAT............................................................	18	1	7	0.29	2	0	2
....................................................................................................TTTACCCTTCTGGGTAGA.............................................................	18	1	4	0.25	1	0	1
.....................................................................................................GTACCCTTCTGGGTAGAC............................................................	18	1	8	0.25	2	0	2

Anti-sense strand reads

CATCCCCCTTCCATTTAAGAGTACCGTCTCGTGGAGGTTTAAATACGCCACACGTAACGAGATGGATCTTCTCGTGCCCTTATACATATTTACTCGAAGGACATGGGAAGACCCATCTCATACCGAGTGCAAGGTTTCCAGATACACGGGAGCTCTATCCCTCAGTTCTACCTCACCGA ********************************************..(((.((..(((((((((((((((...((((((((((......)))...)))))))...)))))))))))))))..)).)))....********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total

Generated: 05/16/2015 at 12:26 AM