ID:

ocu_12

 Coordinate:

chrUn0002:9286950-9287025 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.8 -37.3
mature
  1. chrUn0002:9246701-9246722 -
  2. chrUn0002:9253158-9253179 -
  3. chrUn0002:9256430-9256451 -
  4. chrUn0002:9272391-9272412 -
  5. chrUn0002:9286959-9286980 -
star
  1. chrUn0002:9246737-9246757 -
  2. chrUn0002:9253194-9253214 -
  3. chrUn0002:9256466-9256486 -
  4. chrUn0002:9272427-9272447 -
  5. chrUn0002:9286995-9287015 -

Sense Strand Reads

AATCTGTGGGGGCGAACCTGATGGGACAGGACCTCCATGTGCATGCTGTGTGCAGTGCCCTGCCTAGAACAGCAATGGAGTGGGAATCCATGACCTTCCTGTGCTGTTCTCGGTAGAGTAAGGCTCATCAATATCATCCTCTGTGTTGCCCTCTGGACTGGAAGTGAGGTTGGATC
*********************************************..(((.((..(((.(((((.(((((((((..((((.((..........))))))..))))))))).))))).)))..)).)))....******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
...............................................................................................TTCCTGTGCTGTTCTCGGTAGA........................................................... 22 0 5 68.00 340 293 47
..............................................................................................ATTCCTGTGCTGTTCTCGGT.............................................................. 20 1 5 43.40 217 0 217
...............................................................................................TTCCTGTGCTGTTCTCGGTA............................................................. 20 0 5 31.40 157 21 136
...............................................................................................TTCCTGTGCTGTTCTCGGTAGAT.......................................................... 23 1 5 26.60 133 131 2
...............................................................................................TTCCTGTGCTGTTCTCGGTAG............................................................ 21 0 5 25.80 129 95 34
...............................................................................................TTCCTGTGCTGTTCTCGGT.............................................................. 19 0 5 22.00 110 81 29
..................................................................................................CTGTGCTGTTCTCGGTAGAT.......................................................... 20 1 5 11.20 56 56 0
..............................................................................................ATTCCTGTGCTGTTCTCGGTA............................................................. 21 1 5 9.40 47 0 47
...............................................................................................TTCCTGTGCTGTTCTCGGTAGAA.......................................................... 23 1 5 9.20 46 44 2
...............................................................................................TTCCTGTGCTGTTCTCGGTAGT........................................................... 22 1 6 7.83 47 42 5
............................................................TGCCTAGAACAGCAATGGAGT............................................................................................... 21 0 5 7.80 39 12 27
....................................................................................................GTGCTGTTCTCGGTAGAT.......................................................... 18 1 6 7.17 43 43 0
..................................................................................................CTGTGCTGTTCTCGGTAGT........................................................... 19 1 6 7.00 42 42 0
..................................................................................................CTGTGCTGTTCTCGGTAGA........................................................... 19 0 5 6.40 32 32 0
....................................................................................................GTGCTGTTCTCGGTAGA........................................................... 17 0 5 6.00 30 30 0
..................................................................................................CTGTGCTGTTCTCGGTAG............................................................ 18 0 5 6.00 30 29 1
..................................................................................................CTGTGCTGTTCTCGGT.............................................................. 16 0 5 5.60 28 28 0
................................................................................................TCCTGTGCTGTTCTCGGTAGAT.......................................................... 22 1 5 3.80 19 18 1
...................................................................................................TGTGCTGTTCTCGGTAGAT.......................................................... 19 1 5 2.60 13 13 0
................................................................................................TCCTGTGCTGTTCTCGGTAGA........................................................... 21 0 5 2.40 12 7 5
...................................................................................................TGTGCTGTTCTCGGTAGA........................................................... 18 0 5 2.20 11 11 0
....................................................................................................GTGCTGTTCTCGGTAG............................................................ 16 0 5 2.20 11 11 0
...............................................................................................TTCCTGTGCTGTTCTCGGTAGAAT......................................................... 24 1 5 2.00 10 10 0
............................................................TGCCTAGAACAGCAATGGAGTGG............................................................................................. 23 0 2 1.50 3 2 1
......................................................................................................GCTGTTCTCGGTAGAT.......................................................... 16 1 14 1.50 21 21 0
............................................................TGCCTAGAACAGCAATGGAGTGGT............................................................................................ 24 1 2 1.50 3 1 2
................................................................................................TCCTGTGCTGTTCTCGGT.............................................................. 18 0 5 1.40 7 3 4
....................................................................................................GTGCTGTTCTCGGTAGT........................................................... 17 1 7 1.29 9 9 0
...................................................................................................TGTGCTGTTCTCGGTAG............................................................ 17 0 5 1.20 6 6 0
...............................................................................................TTCCTGTGCTGTTCTCGG............................................................... 18 0 5 1.20 6 6 0
..............................................................................................CTTCCTGTGCTGTTCTCGGTAG............................................................ 22 0 5 1.20 6 6 0
................................................................................................TCCTGTGCTGTTCTCGGTA............................................................. 19 0 5 1.20 6 0 6
............................................................................................AAATTCCTGTGCTGTTCTCGGTAG............................................................ 24 2 5 1.00 5 5 0
...............................................................................................TTCCTGTGCTGTTCTCGGTAGAGGAA....................................................... 26 1 2 1.00 2 2 0
...............................................................................................TTCCTGTGCTGTTCTCGGTAGAAA......................................................... 24 2 5 1.00 5 5 0
..................................................................................................CTGTGCTGTTCTCGGTAGAA.......................................................... 20 1 5 1.00 5 5 0
..............................................................................................ATTCCTGTGCTGTTCTCGGTAGA........................................................... 23 1 5 1.00 5 2 3
...................................................................................................TGTGCTGTTCTCGGTAGT........................................................... 18 1 7 1.00 7 7 0
................................................................................................TCCTGTGCTGTTCTCGGTAGT........................................................... 21 1 6 0.83 5 5 0
............................................................TGCCTAGAACAGCAATGGAGTG.............................................................................................. 22 0 5 0.80 4 1 3
................................................................................................TCCTGTGCTGTTCTCGGTAGAA.......................................................... 22 1 5 0.80 4 4 0
......................................................................................................GCTGTTCTCGGTAGA........................................................... 15 0 5 0.80 4 4 0
..............................................................................................ATTCCTGTGCTGTTCTCGGTAG............................................................ 22 1 5 0.80 4 1 3
...............................................................................................TTCCTGTGCTGTTCTCGGTAT............................................................ 21 1 5 0.80 4 4 0
........................................GCATGCTGTGTGCAGTGCCC.................................................................................................................... 20 0 7 0.71 5 5 0
............................................................................................AGATTCCTGTGCTGTTCTCGGT.............................................................. 22 2 6 0.67 4 3 1
...............................................................................................TTCCTGTGCTGTTCTCGGTAAA........................................................... 22 1 5 0.60 3 3 0
...............................................................................................TTCCTGTGCTGTTCTCGGTAGAC.......................................................... 23 1 5 0.60 3 3 0
............................................................TGCCTAGAACAGCAATGGAG................................................................................................ 20 0 5 0.60 3 0 3
...............................................................................................TTCCTGTGCTGTTCTCGGTAA............................................................ 21 1 5 0.60 3 3 0
...................................................................................................TGTGCTGTTCTCGGTAGAAT......................................................... 20 1 5 0.60 3 3 0
..............................................................................................ATTCCTGTGCTGTTCTCGGTAGAA.......................................................... 24 2 5 0.60 3 2 1
...............................................................................................TTCCTGTGCTGTTCTCGGTAGATT......................................................... 24 1 5 0.60 3 3 0
..............................................................................................ATTCCTGTGCTGTTCTCGGTAGT........................................................... 23 2 6 0.50 3 0 3
...............................................................................................TTCCTGTGCTGTTCTCGGTAGTT.......................................................... 23 2 6 0.50 3 3 0
...............................................................................................TTCCTGTGCTGTTCTCGGA.............................................................. 19 1 6 0.50 3 3 0
..............................................................................................ATTCCTGTGCTGTTCTCGGTAGAT.......................................................... 24 2 5 0.40 2 2 0
.............................................................GCCTAGAACAGCAATGGAGT............................................................................................... 20 0 5 0.40 2 0 2
...............................................................................................TTCCTGTGCTGTTCTCGGCAGA........................................................... 22 1 5 0.40 2 2 0
.........................................................................................AGGGTCTTCCTGTGCTGTTCTCGGT.............................................................. 25 3 5 0.40 2 0 2
.................................................................................................CCTGTGCTGTTCTCGGT.............................................................. 17 0 5 0.40 2 2 0
............................................................................................AGTTTCCTGTGCTGTTCTCGGT.............................................................. 22 2 5 0.40 2 0 2
............................................................TGCCTAGAACAGCAATGGA................................................................................................. 19 0 5 0.40 2 0 2
...................................................................................................TGTGCTGTTCTCGGTAGAA.......................................................... 19 1 5 0.40 2 2 0
................................................................................................TCCTGTGCTGTTCTCGGTAG............................................................ 20 0 5 0.40 2 1 1
..................................................................................................CTGTGCTGTTCTCGGTA............................................................. 17 0 5 0.40 2 1 1
.........................................................................................AGGGCCTTCCTGTGCTGTTCTCGGTA............................................................. 26 2 5 0.40 2 0 2
...............................................................................................TTCCTGTGCTGTTCTCGGC.............................................................. 19 1 5 0.40 2 2 0
...............................................................................................TTCCTGTGCTGTTCTC................................................................. 16 0 14 0.36 5 5 0
...................................................................................................TGTGCTGTTCTCGGT.............................................................. 15 0 9 0.33 3 2 1
.........................................................................................AGCAGCTTCCTGTGCTGTTCTCGGT.............................................................. 25 3 6 0.33 2 0 2
..................................................................................................CTGTGCTGTTCTCGGTAT............................................................ 18 1 7 0.29 2 2 0
.............................................................................................AGTTCCTGTGCTGTTCTCGGT.............................................................. 21 2 9 0.22 2 2 0
........................................GCATGCTGTGTGCAGTG....................................................................................................................... 17 0 9 0.22 2 2 0
.........................................................................................AGAACCTTCCTGTGCTGTTCTCGGTAGG........................................................... 28 3 5 0.20 1 0 1
...............................................................................................TTCCTGGGCTGTTCTCGGTAG............................................................ 21 1 5 0.20 1 0 1
..............................................................................................ATTCATGTGCTGTTCTCGGTAGA........................................................... 23 2 5 0.20 1 0 1
..................................................................................................CTGTGCTGTTCTCGGTAGAC.......................................................... 20 1 5 0.20 1 1 0
..................................................................................................CTTTGCTGTTCTCGGTAGA........................................................... 19 1 5 0.20 1 1 0
.........................................................................................AGGCGCTTCCTGTGCTGTTCTCGGT.............................................................. 25 3 5 0.20 1 0 1
...............................................................................................TTCCTGTGCTGTTCTTGGTAGA........................................................... 22 1 5 0.20 1 1 0
..............................................................................................CTTCCTGTGCTGTTCTCGGTA............................................................. 21 0 5 0.20 1 0 1
........................................................GGAATGCCTAGAACAGCAATGGAGT............................................................................................... 25 3 5 0.20 1 0 1
..........................................................................................AGAGCTTCCTGTGCTGTTCTCGGTAG............................................................ 26 2 5 0.20 1 0 1
..........................................................................................GGAAATTCCTGTGCTGTTCTCGGTAGA........................................................... 27 3 5 0.20 1 0 1
...............................................................................................TTCCTGTTCTGTTCTCGGTA............................................................. 20 1 5 0.20 1 0 1
...............................................................................................TTCCTGTGCTGTTCTCGGTATAT.......................................................... 23 2 5 0.20 1 1 0
...............................................................................................TTCCTGAGCTGTTCTCGGTAGAGGA........................................................ 25 2 5 0.20 1 1 0
...............................................................................................TTCCTGTACTGTTCTCGGTA............................................................. 20 1 5 0.20 1 0 1
............................................................CGCCTAGAACAGCAATGGAGT............................................................................................... 21 1 5 0.20 1 0 1
.........................................................................................ATTAGATTCCTGTGCTGTTCTCGGTA............................................................. 26 3 5 0.20 1 0 1
...............................................................................................TTCCTGTGCCGTTCTCGGTAG............................................................ 21 1 5 0.20 1 1 0
............................................................................................AGCTTCCTGTGCTGTTCTCGGT.............................................................. 22 1 5 0.20 1 0 1
.............................................................................................TGTTCCTGTGCTGTTCTCGGTA............................................................. 22 2 5 0.20 1 0 1
...............................................................................................CTCCTGTGCTGTTCTCGGTA............................................................. 20 1 5 0.20 1 0 1
.............................................................................................ACTTCCTGTGCTGTTCTCGGTA............................................................. 22 1 5 0.20 1 0 1
.........................................................................................AGCACATTCCTGTGCTGTTCTCGGTA............................................................. 26 3 5 0.20 1 0 1
...........................................................................................AGCCTTCCTGTGCTGTTCTCGGTA............................................................. 24 2 5 0.20 1 0 1
...........................................................................................GGCCTTCCTGTGCTGTTCTCGGTA............................................................. 24 1 5 0.20 1 0 1
...............................................................................................TCCCTGTGCTGTTCTCGGTAGA........................................................... 22 1 5 0.20 1 1 0
.........................................................................................ATGCACTTCCTGTGCTGTTCTCGGTA............................................................. 26 2 5 0.20 1 0 1
.............................................................................................AGTTCCTGTGCTGTTCTCGGTAGA........................................................... 24 2 5 0.20 1 1 0
.........................................................................................ATGCCCTTCCTGTGCTGTTCTCGGTA............................................................. 26 1 5 0.20 1 0 1
...............................................................................................TTCCTGTGCTGTTCTCGGTAGC........................................................... 22 1 5 0.20 1 1 0
.............................................................................................CCTTCCTGTGCTGTTCTCGGTA............................................................. 22 0 5 0.20 1 0 1
..............................................................................................ATTCCTGTGCTGTTCTCGGTAA............................................................ 22 2 5 0.20 1 0 1
..............................................................................................CTTCCTGTGCTGTTCTCGGTAGA........................................................... 23 0 5 0.20 1 1 0
.........................................................................................AGGCCCTTCCTGTGCTGTTCTCGGT.............................................................. 25 2 5 0.20 1 0 1
..............................................................................................TTTCCTGTGCTGTTCTCGGT.............................................................. 20 1 5 0.20 1 0 1
.........................................................................................AGCGCCTTCCTGTGCTGTTCTCGGT.............................................................. 25 3 5 0.20 1 0 1
................................................................................................TCCTGTGCTGTTCTCGGTCGAT.......................................................... 22 2 5 0.20 1 1 0
............................................................................................GATTTCCTGTGCTGTTCTCGGTAGA........................................................... 25 3 5 0.20 1 0 1
....................................................................................................GTGCTGTTCTCGGTAGAG.......................................................... 18 0 5 0.20 1 1 0
...............................................................................................TTACTGTGCTGTTCTCGGTA............................................................. 20 1 5 0.20 1 0 1
............................................................................................CACTTCCTGTGCTGTTCTCGGTA............................................................. 23 2 5 0.20 1 0 1
..................................................................................................CTGTGCTGTTCTCGGTAGATTT........................................................ 22 2 5 0.20 1 1 0
...........................................................................................ACTCTTCCTGTGCTGTTCTCGGTAG............................................................ 25 3 5 0.20 1 0 1
..........................................................AATGCCTAGAACAGCAATGGAGTG.............................................................................................. 24 2 5 0.20 1 0 1
.........................................................................................AGAAGCTTCCTGTGCTGTTCTCGGTAG............................................................ 27 3 5 0.20 1 0 1
.........................................................................................AAGAGTTTCCTGTGCTGTTCTCGGT.............................................................. 25 3 5 0.20 1 0 1
....................................................................................................GTGCTGTTCTCGGTAGAAT......................................................... 19 1 5 0.20 1 1 0
...............................................................................................TTCCTGTGCTTTTCTCGGTAG............................................................ 21 1 5 0.20 1 1 0
.........................................................................................AAGCCATTCCTGTGCTGTTCTCGGTA............................................................. 26 3 5 0.20 1 0 1
...............................................................................................TTCCTGTGCTGTTCTCGGTAAAAT......................................................... 24 2 5 0.20 1 1 0
..................................................................................................CTGTGCTGTTCTCGGCAGA........................................................... 19 1 5 0.20 1 1 0
...............................................................................................TTCATGTGCTGTTCTCGGTAG............................................................ 21 1 5 0.20 1 0 1
.........................................................................................ACAAGCTTCCTGTGCTGTTCTCGGT.............................................................. 25 3 5 0.20 1 0 1
...............................................................................................TTCCTGTGCTGTTCTCGATAGA........................................................... 22 1 5 0.20 1 1 0
..............................................................................................CTTCCTGTGCTGTTCTCGGT.............................................................. 20 0 5 0.20 1 1 0
.................................................................................................CCTGTGCTGTTCTCGGTAGATT......................................................... 22 1 5 0.20 1 1 0
..............................................................................................GTTCCTGTGCTGTTCTCGGT.............................................................. 20 1 5 0.20 1 0 1
...............................................................................................TTCCTGCGCTGTTCTCGGTAGATT......................................................... 24 2 5 0.20 1 1 0
..................................................................................................CTGTGCTGTTCTCGGTAGAG.......................................................... 20 0 5 0.20 1 1 0
.........................................................................................AGGCCCTTCCTGTGCTGTTCTCGGTA............................................................. 26 2 5 0.20 1 0 1
..................................................................................................CTGTGCTGTTCTCGGTAGAAT......................................................... 21 1 5 0.20 1 1 0
...........................................................................................AAGCTTCCTGTGCTGTTCTCGGT.............................................................. 23 2 5 0.20 1 0 1
...............................................................................................CTCCTGTGCTGTTCTCGGTAG............................................................ 21 1 5 0.20 1 1 0
...............................................................................................TTCCTGTTCTGTTCTCGGTAGA........................................................... 22 1 5 0.20 1 0 1
..........................................................................................TGAGTTTCCTGTGCTGTTCTCGGTA............................................................. 25 2 5 0.20 1 0 1
..............................................................................................AGTCCTGTGCTGTTCTCGGTA............................................................. 21 2 5 0.20 1 0 1
...............................................................................................TTCCTGTGCTGTTCTCGGTAGAGT......................................................... 24 0 5 0.20 1 1 0
.........................................................................................AGGTCCTTCCTGTGCTGTTCTCGGTA............................................................. 26 2 5 0.20 1 0 1
....................................................................................................GTGCTGTTCTCGGTA............................................................. 15 0 6 0.17 1 0 1
...........................................................................................ACTCTTCCTGTGCTGTTCTCGGTA............................................................. 24 3 6 0.17 1 0 1
...........................................................................................ATGCTTCCTGTGCTGTTCTCGGTA............................................................. 24 3 6 0.17 1 0 1
............................................................................................CCATTCCTGTGCTGTTCTCGGT.............................................................. 22 2 6 0.17 1 0 1
.........................................................................................AGGGCCTTCCTGTGCCGTTCTCGGT.............................................................. 25 3 6 0.17 1 0 1
............................................................................................AAATTCCTGTGCTGTTCTCGGTA............................................................. 23 2 6 0.17 1 0 1
.....................................................................................................TGCTGTTCTCGGTAG............................................................ 15 0 6 0.17 1 1 0
...............................................................................................TTCCTGTGCTGCTCTCGGTAG............................................................ 21 1 6 0.17 1 1 0
...............................................................................................TTCCTGTGCTGTTCCCGGTAGT........................................................... 22 2 6 0.17 1 1 0
..............................................................................................ATTACTGTGCTGTTCTCGGTA............................................................. 21 2 6 0.17 1 0 1
...........................................................................................TAGATTCCTGTGCTGTTCTCGGTA............................................................. 24 3 6 0.17 1 0 1
....................................................................................................GTGCTGTTCTCGGTAGAA.......................................................... 18 1 7 0.14 1 1 0
........................................GCATGCTGTGTGCAGTGCC..................................................................................................................... 19 0 7 0.14 1 1 0
.........................................................................................AGGGGCTTCCTGTGCTGTTCTCGGT.............................................................. 25 3 7 0.14 1 0 1
..................................................................................................CTGTGCTGTTCTCGGTAGC........................................................... 19 1 7 0.14 1 1 0
............................................................................................AAATTCCTGTGCTGTTCTCGGT.............................................................. 22 2 7 0.14 1 0 1
....................................................................................................GTGCTGTTCTCGGTAGAC.......................................................... 18 1 7 0.14 1 1 0
...........................................................................................AGCTTTCCTGTGCTGTTCTCGGTA............................................................. 24 3 8 0.13 1 0 1
...............................................................CTAGAACAGCAATGGAGT............................................................................................... 18 0 8 0.13 1 0 1
..................................................................................................CTGGGCTGTTCTCGGTAGAT.......................................................... 20 2 8 0.13 1 1 0
..................................................................................................CTGTGCTGTTCTCGGTAA............................................................ 18 1 9 0.11 1 1 0
....................................................................................................GTGCTGTTCTCGGTAT............................................................ 16 1 20 0.10 2 2 0
.................................................................AGAACAGCAATGGAGT............................................................................................... 16 0 10 0.10 1 0 1
.................................................................................................ACTGTGCTGTTCTCGGT.............................................................. 17 1 20 0.10 2 1 1
..............................................................................................ATTCCTGGGCTGTTCTCGGT.............................................................. 20 2 12 0.08 1 0 1
............................................................................................AGATTCCTGTGCTGTTCTCGGC.............................................................. 22 3 14 0.07 1 1 0
..............................................................................................ATTCCTGTGCTGTTCTCGGA.............................................................. 20 2 15 0.07 1 0 1
....................................................................................................GGGCTGTTCTCGGTAGAAT......................................................... 19 2 15 0.07 1 1 0
..............................................................................................ATTACTGTGCTGTTCTCGGT.............................................................. 20 2 15 0.07 1 0 1
...................................................................................................AGTGCTGTTCTCGGTAGAT.......................................................... 19 2 18 0.06 1 1 0
..............................................................................................ATTTCTGTGCTGTTCTCGGT.............................................................. 20 2 19 0.05 1 0 1
....................................................................................................GGGCTGTTCTCGGTAGAT.......................................................... 18 2 20 0.05 1 1 0
.....................................................................................................TGCTGTTCTCGGTAGT........................................................... 16 1 20 0.05 1 1 0
......................................................................................................GCTGTTCTCGGTAGT........................................................... 15 1 20 0.05 1 1 0
...............................................................................................TTCCTGTGCTGTTCTCTGCA............................................................. 20 2 20 0.05 1 0 1

Anti-sense strand reads

TTAGACACCCCCGCTTGGACTACCCTGTCCTGGAGGTACACGTACGACACACGTCACGGGACGGATCTTGTCGTTACCTCACCCTTAGGTACTGGAAGGACACGACAAGAGCCATCTCATTCCGAGTAGTTATAGTAGGAGACACAACGGGAGACCTGACCTTCACTCCAACCTAG
********************************************..(((.((..(((.(((((.(((((((((..((((.((..........))))))..))))))))).))))).)))..)).)))....********************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:26 AM