ID:

ocu_1

 Coordinate:

chrUn0002:10732658-10732745 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-28.2 -28.0 -28.0

Sense Strand Reads

GAACTCAGAGTTATAGGATAAGTTGGGCAGAGAAACTACCTTCAGCCATGTTGTGGGTGGTACCCTACTTAAGAGTGTGCCTTTCATATATATTGTACTGTGAAGTGCACCCTTCTGAGTAAGGTAATGCTTGACAAGTTCGACATTTTTCATGTTGAATTCCCTAAGAAAAATCTGTCCCAAATAAG
**************************************************(((((((((.((((.((((((.(((.((((.((((((((((...))).))))))).)))).))).)))))).)))).))))).))))*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
.................................................................TACTTAAGAGTGTGCCTTTC....................................................................................................... 20 0 1 22.00 22 0 22
.................................................................TACTTAAGAGTGTGCCTTTCAT..................................................................................................... 22 0 1 18.00 18 18 0
.....................................................................................................GAAGTGCACCCTTCTGAGTAA.................................................................. 21 0 1 11.00 11 10 1
.....................................................................................................GAAGTGCACCCTTCTGAGT.................................................................... 19 0 1 9.00 9 9 0
....................................................................................................TGAAGTGCACCCTTCTGAGTAAG................................................................. 23 0 1 7.00 7 7 0
......................................................................................................AAGTGCACCCTTCTGAGTAAGT................................................................ 22 1 2 6.50 13 12 1
.................................................................TACTTAAGAGTGTGCCTTT........................................................................................................ 19 0 1 6.00 6 0 6
.....................................................................................................GAAGTGCACCCTTCTGAGTAAT................................................................. 22 1 1 5.00 5 5 0
.....................................................................................................GAAGTGCACCCTTCTGAGTAAGT................................................................ 23 1 1 5.00 5 5 0
......................................................................................................AAGTGCACCCTTCTGAGTAA.................................................................. 20 0 1 5.00 5 4 1
....................................................................................................TGAAGTGCACCCTTCTGAGTAA.................................................................. 22 0 1 4.00 4 1 3
....................................................................................................TGAAGTGCACCCTTCTGAGTA................................................................... 21 0 1 4.00 4 3 1
....................................................................................................TGAAGTGCACCCTTCTGAGT.................................................................... 20 0 1 4.00 4 4 0
....................................................................................................TGAAGTGCACCCTTCTGAGTAAGT................................................................ 24 1 1 4.00 4 4 0
.....................................................................................................GAAGTGCACCCTTCTGAGTAAC................................................................. 22 1 1 3.00 3 3 0
......................................................................................................AAGTGCACCCTTCTGAGTAAG................................................................. 21 0 1 3.00 3 3 0
.....................................................................................................GAAGTGCACCCTTCTGAG..................................................................... 18 0 1 2.00 2 2 0
..................................................................ACTTAAGAGTGTGCCTTTC....................................................................................................... 19 0 1 2.00 2 0 2
.................................................................TACTTAAGAGTGTGCCTT......................................................................................................... 18 0 1 2.00 2 0 2
.................................................................TACTTAAGAGTGTGCCTTTCA...................................................................................................... 21 0 1 2.00 2 0 2
......................................................................................................AAGTGCACCCTTCTGAGT.................................................................... 18 0 2 1.50 3 3 0
................................................................ATACTTAAGAGTGTGCCTTT........................................................................................................ 20 1 1 1.00 1 0 1
................................................................ATACTTAAGAGTGTGCCTTTC....................................................................................................... 21 1 1 1.00 1 0 1
....................................................................................................TGAAGTGCACCCTTCCGAGTAA.................................................................. 22 1 1 1.00 1 1 0
..................................................................................................ACTGAAGTGCACCCTTCTGAGTAA.................................................................. 24 2 1 1.00 1 0 1
.................................................................TACTTAAGAGTGTGCCTTTCAA..................................................................................................... 22 1 1 1.00 1 0 1
....................................................................................................TGAAGTGCACCCATCTGAGTA................................................................... 21 1 1 1.00 1 1 0
.................................................................TACTTAAGAGTGTGCCTTTTAT..................................................................................................... 22 1 1 1.00 1 1 0
.....................................................................................................GAAGGGCACCCTTCTGAGTAA.................................................................. 21 1 1 1.00 1 1 0
.................................................................TACTTAAGAGTGTGCCTTTCATATGCC................................................................................................ 27 3 1 1.00 1 0 1
................................................................ATACTTAAGAGTGTGCCTTTCA...................................................................................................... 22 1 1 1.00 1 0 1
.....................................................................................................GAAGTGCACCCTTCTGAGTA................................................................... 20 0 1 1.00 1 0 1
......................................................................................................AAGTGCACCCTTCTGAGTAAGA................................................................ 22 1 1 1.00 1 1 0
....................................................................................................TGAAGTGCACCCTTCTGAGTAAA................................................................. 23 1 1 1.00 1 1 0
............................................................................................TTGTACTGTGAAGTGCACCCTTCTGAGTAA.................................................................. 30 0 1 1.00 1 1 0
..................................................................ACTTAAGAGTGTGCCTTT........................................................................................................ 18 0 1 1.00 1 0 1
..............................................................GGATACTTAAGAGTGTGCCTTTCA...................................................................................................... 24 3 2 0.50 1 0 1
....................................................................................................GGAAGTGCACCCTTCTGAGTA................................................................... 21 1 2 0.50 1 0 1
...............................................................AATACTTAAGAGTGTGCCTTTC....................................................................................................... 22 2 2 0.50 1 0 1
......................................................................................................AAGGGCACCCTTCTGAGTAAGT................................................................ 22 2 2 0.50 1 1 0

Anti-sense strand reads

CTTGAGTCTCAATATCCTATTCAACCCGTCTCTTTGATGGAAGTCGGTACAACACCCACCATGGGATGAATTCTCACACGGAAAGTATATATAACATGACACTTCACGTGGGAAGACTCATTCCATTACGAACTGTTCAAGCTGTAAAAAGTACAACTTAAGGGATTCTTTTTAGACAGGGTTTATTC
***************************************************(((((((((.((((.((((((.(((.((((.((((((((((...))).))))))).)))).))).)))))).)))).))))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:26 AM