ID:

ocu-mir-9-2

 Coordinate:

chr11:8577699-8577770 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.0
mature
  1. chr11:8577705-8577726 -
  2. chr13:36488272-36488293 +
star
  1. chr11:8577741-8577763 -
  2. chr13:36488233-36488255 +

Sense Strand Reads

CAGGAGCGCGGCGAGGACGGGGACGCGCAGCCGGCGAGCGAGGGAAGCCAGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTATTGGCCTTCATAAAGCTAGATAACCGAAAGTAAGAACTGCTTCAAGGTCGCCGCGAGCGGGACCGCCGCGCAGAGACCCTAGAAACC
******************************************.(((((.((((.((((.(((((((((((((((.((((((.((....)).)))))).))))))))))))))).)))).)))))))))...***************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
..............................................................................................ATAAAGCTAGATAACCGAAAGT........................................................ 22 0 2 21.50 43 42 1
..............................................................................................ATAAAGCTAGATAACCGAAA.......................................................... 20 0 2 19.00 38 38 0
.........................................................TCTTTGGTTATCTAGCTGTATGA............................................................................................ 23 0 2 16.50 33 9 24
.........................................................TCTTTGGTTATCTAGCTGTAT.............................................................................................. 21 0 2 14.00 28 26 2
...............................................................................................TAAAGCTAGATAACCGAAAGT........................................................ 21 0 2 13.50 27 25 2
..............................................................................................ATAAAGCTAGATAACCGAAAG......................................................... 21 0 2 9.50 19 13 6
...............................................................................................TAAAGCTAGATAACCGAAAGTA....................................................... 22 0 2 5.50 11 11 0
.........................................................TCTTTGGTTATCTAGCTGTATG............................................................................................. 22 0 2 5.50 11 9 2
.........................................................TCTTTGGTTATCTAGCTGTATGAA........................................................................................... 24 1 2 4.50 9 1 8
...............................................................................................TAAAGCTAGATAACCGAAAG......................................................... 20 0 2 3.50 7 7 0
..............................................................................................ATAAAGCTAGATAACCGAAAGTA....................................................... 23 0 2 1.50 3 3 0
.........................................................TCTTTGGTTATCTAGCTGT................................................................................................ 19 0 2 1.50 3 3 0
.............................................................................................AATAAAGCTAGATAACCGAAA.......................................................... 21 1 2 1.50 3 3 0
...............................................................................................TAAAGCTAGATAACCGAAA.......................................................... 19 0 2 1.50 3 3 0
........................................................ATCTTTGGTTATCTAGCTGTATGA............................................................................................ 24 0 2 1.50 3 0 3
..............................................................................................ATAAAGCGAGATAACCGAAAGT........................................................ 22 1 2 1.00 2 2 0
...............................................................................................TAAAGCTAGATAACCGAAAGTAAT..................................................... 24 1 2 1.00 2 0 2
.........................................................TCTTTGGTTATTTAGCTGTATGA............................................................................................ 23 1 2 1.00 2 0 2
.........................................................TCTTTGGTTATCTAGCTGTATGT............................................................................................ 23 1 2 1.00 2 2 0
.........................................................TCTTTGGTTATCTAGCTGTATGATT.......................................................................................... 25 1 2 1.00 2 0 2
...............................................................................................TAAAGCTAGATAACCGAAAGTAGGGT................................................... 26 3 1 1.00 1 1 0
.........................................................TCTTTGGTTATCTAGCTGTATGAT........................................................................................... 24 1 2 0.50 1 0 1
.........................................................TCTTTGGTTATCTAGCTGTATGC............................................................................................ 23 1 2 0.50 1 1 0
.............................................................TGGTTATCTAGCTGTATGAT........................................................................................... 20 1 2 0.50 1 0 1
.............................................................................................AATAAAGCTAGATAACCGAAAGT........................................................ 23 1 2 0.50 1 1 0
..............................................................................................ATAACGCTAGATAACCGAAAG......................................................... 21 1 2 0.50 1 1 0
...............................................................................................TAAAGCTAGATAACCGAAAGA........................................................ 21 1 2 0.50 1 1 0
...............................................................................................TAAAGCTAGATAACCGAAAGTAA...................................................... 23 0 2 0.50 1 1 0
...............................................................................................TAAAGCTAGATAACCGAAAGTAT...................................................... 23 1 2 0.50 1 0 1
.........................................................TCTTTGGTTATCAAGCTGTATGATT.......................................................................................... 25 2 2 0.50 1 0 1
....................................................GGGAATCTTTGGTTATCTAGCTGTAT.............................................................................................. 26 3 2 0.50 1 1 0
............................................................................................GAATAAAGCTAGATAACCGAAAG......................................................... 23 2 2 0.50 1 1 0
...............................................................GTTATCTAGCTGTATGA............................................................................................ 17 0 2 0.50 1 0 1
..............................................................................................ATAAAGCTAGATAACCGAAAGAA....................................................... 23 1 2 0.50 1 1 0
...............................................................................................TAAAGCTAAATAACCGAAAGT........................................................ 21 1 2 0.50 1 1 0
.....................................................CTCCTCTTTGGTTATCTAGCTGTAT.............................................................................................. 25 3 2 0.50 1 1 0
.........................................................TCTTTGGTTATCTAGCTGTATGAAA.......................................................................................... 25 2 2 0.50 1 1 0
...................................................................................................GCTAGATAACCGAAA.......................................................... 15 0 2 0.50 1 1 0
......................................................ATGTCTTTGGTTATCTAGCTGT................................................................................................ 22 2 3 0.33 1 0 1
..............................................................GGTTATCTAGCTGTATGAA........................................................................................... 19 1 4 0.25 1 0 1
...............................................................GTTATCTAGCTGTATGAT........................................................................................... 18 1 6 0.17 1 0 1
..............................................................................................ATAAAGCTAGATTACCAAAA.......................................................... 20 2 20 0.05 1 0 1

Anti-sense strand reads

GTCCTCGCGCCGCTCCTGCCCCTGCGCGTCGGCCGCTCGCTCCCTTCGGTCAACAATAGAAACCAATAGATCGACATACTCACATAACCGGAAGTATTTCGATCTATTGGCTTTCATTCTTGACGAAGTTCCAGCGGCGCTCGCCCTGGCGGCGCGTCTCTGGGATCTTTGG
*****************************************.(((((.((((.((((.(((((((((((((((.((((((.((....)).)))))).))))))))))))))).)))).)))))))))...****************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes
...........................................................................................AAGTATGTCGATCTATTGG.............................................................. 19 1 4 0.25 1 1

Generated: 05/16/2015 at 12:29 AM