ID:

ocu-mir-9-1

 Coordinate:

chr13:36488062-36488306 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.7 -39.6 -39.5
mature
  1. chr11:8577705-8577726 -
  2. chr13:36488272-36488293 +
star
  1. chr11:8577741-8577763 -
  2. chr13:36488233-36488255 +

Sense Strand Reads

TGGTCTTTTTTTGCCTTGACTCCATTTCTCTCGGCCCCACCTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTTGGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGGTGTGGAGTCTTCATAAAGCTAGATAACCGAAAGTAAAAATAACCCCATACACTGCGCAGGGGACCAGGGAACCTGGCGTCGGGGCGGGGGCGGGGCG
**************************************************************************************************************************************************************************************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))...************************************************ 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
....................................................................................................................................................................................................................................................................ATAAAGCTAGATAACCGAAAGT............................................................... 22 0 2 21.50 43 42 1
....................................................................................................................................................................................................................................................................ATAAAGCTAGATAACCGAAA................................................................. 20 0 2 19.00 38 38 0
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATGA..................................................................................................... 23 0 2 16.50 33 9 24
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTAT....................................................................................................... 21 0 2 14.00 28 26 2
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAAGT............................................................... 21 0 2 13.50 27 25 2
....................................................................................................................................................................................................................................................................ATAAAGCTAGATAACCGAAAG................................................................ 21 0 2 9.50 19 13 6
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAAGTA.............................................................. 22 0 2 5.50 11 11 0
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATG...................................................................................................... 22 0 2 5.50 11 9 2
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATGAA.................................................................................................... 24 1 2 4.50 9 1 8
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAAG................................................................ 20 0 2 3.50 7 7 0
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGT......................................................................................................... 19 0 2 1.50 3 3 0
....................................................................................................................................................................................................................................................................ATAAAGCTAGATAACCGAAAGTA.............................................................. 23 0 2 1.50 3 3 0
...................................................................................................................................................................................................................................................................AATAAAGCTAGATAACCGAAA................................................................. 21 1 2 1.50 3 3 0
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAA................................................................. 19 0 2 1.50 3 3 0
............................................................................................................................................................................................................................ATCTTTGGTTATCTAGCTGTATGA..................................................................................................... 24 0 2 1.50 3 0 3
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAAGTAAT............................................................ 24 1 2 1.00 2 0 2
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATGT..................................................................................................... 23 1 2 1.00 2 2 0
............................................................................................................................................................................................................................ATCTTTGGTTATCTAGCTGTATGAGTGG................................................................................................. 28 0 1 1.00 1 1 0
.............................................................................................................................................................................................................................TCTTTGGTTATTTAGCTGTATGA..................................................................................................... 23 1 2 1.00 2 0 2
....................................................................................................................................................................................................................................................................ATAAAGCTAGATAACCGAAAGTAATCGTA........................................................ 29 3 1 1.00 1 1 0
....................................................................................................................................................................................................................................................................ATAAAGCGAGATAACCGAAAGT............................................................... 22 1 2 1.00 2 2 0
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATGATT................................................................................................... 25 1 2 1.00 2 0 2
....................................................................................................................................................................................................................................................................ATAAAGCTAGATAACCGAAAGAA.............................................................. 23 1 2 0.50 1 1 0
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATGAAA................................................................................................... 25 2 2 0.50 1 1 0
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATGC..................................................................................................... 23 1 2 0.50 1 1 0
...................................................................................................................................................................................................................................................................AATAAAGCTAGATAACCGAAAGT............................................................... 23 1 2 0.50 1 1 0
....................................................................................................................................................................................................................................................................ATAACGCTAGATAACCGAAAG................................................................ 21 1 2 0.50 1 1 0
...................................................................................................................................................................................................................................GTTATCTAGCTGTATGA..................................................................................................... 17 0 2 0.50 1 0 1
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAAGA............................................................... 21 1 2 0.50 1 1 0
.....................................................................................................................................................................................................................................................................TAAAGCTAAATAACCGAAAGT............................................................... 21 1 2 0.50 1 1 0
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAAGTAT............................................................. 23 1 2 0.50 1 0 1
.........................................................................................................................................................................................................................................................................GCTAGATAACCGAAA................................................................. 15 0 2 0.50 1 1 0
.................................................................................................................................................................................................................................TGGTTATCTAGCTGTATGAT.................................................................................................... 20 1 2 0.50 1 0 1
..................................................................................................................................................................................................................................................................GAATAAAGCTAGATAACCGAAAG................................................................ 23 2 2 0.50 1 1 0
........................................................................................................................................................................................................................GGGAATCTTTGGTTATCTAGCTGTAT....................................................................................................... 26 3 2 0.50 1 1 0
.............................................................................................................................................................................................................................TCTTTGGTTATCAAGCTGTATGATT................................................................................................... 25 2 2 0.50 1 0 1
.........................................................................................................................................................................................................................CTCCTCTTTGGTTATCTAGCTGTAT....................................................................................................... 25 3 2 0.50 1 1 0
.....................................................................................................................................................................................................................................................................TAAAGCTAGATAACCGAAAGTAA............................................................. 23 0 2 0.50 1 1 0
.............................................................................................................................................................................................................................TCTTTGGTTATCTAGCTGTATGAT.................................................................................................... 24 1 2 0.50 1 0 1
..........................................................................................................................................................................................................................ATGTCTTTGGTTATCTAGCTGT......................................................................................................... 22 2 3 0.33 1 0 1
..................................................................................................................................................................................................................................GGTTATCTAGCTGTATGAA.................................................................................................... 19 1 4 0.25 1 0 1
...................................................................................................................................................................................................................................GTTATCTAGCTGTATGAT.................................................................................................... 18 1 6 0.17 1 0 1

Anti-sense strand reads

ACCAGAAAAAAACGGAACTGAGGTAAAGAGAGCCGGGGTGGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAACCAACAATAGAAACCAATAGATCGACATACTCACCACACCTCAGAAGTATTTCGATCTATTGGCTTTCATTTTTATTGGGGTATGTGACGCGTCCCCTGGTCCCTTGGACCGCAGCCCCGCCCCCGCCCCGC
************************************************.(((((((....((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))...)))))))...************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes
.................................................................................................................................................................................................................................................................AAGTATGTCGATCTATTGG..................................................................... 19 1 4 0.25 1 1

Generated: 05/16/2015 at 12:32 AM