ID:

ocu-mir-7670

 Coordinate:

chrUn0076:946433-946503 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CTGGCAGCGTTGCGAAACTTTGGCCTTGTTCGTTCCATTGCTTTTCGCTGGTTAAAATGTGTGGGTTGGGGGATTTTCTTTCCACAGATGCTGTCTTCCCCCTTGAATATATATCTGTAGCAGTTAACAAAAAGATGTGTGTGTGTGCACGTGCGCGTGTGTGCGAGGGTG
***********************************.....(((((.((((......(((((((....((((((..........((((...))))..)))))).....)))))))......)))).....)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
.TGGCAGCGTTGCGAAACTTTGGCCTT................................................................................................................................................ 26 0 1 3.00 3 0 3
................................ATCCATTGCTTTTCGCTGGTTAAAATGT............................................................................................................... 28 1 1 2.00 2 2 0
.................................TCCATTGCTTTTCGCTGGTTAAAATGTGT............................................................................................................. 29 0 1 2.00 2 0 2
............................................................................................................ATATATCTGTAGCAGTTAACAAAA....................................... 24 0 1 2.00 2 2 0
............................................................................................................................TAACAAAAAGATGTTTGTGTGTGC....................... 24 1 1 2.00 2 2 0
....................................................................................................................GTAGCAGTTAACAAAAAGATGTGTGTGT........................... 28 0 1 2.00 2 2 0
.................................................................................................................TCTGTAGCAGTTAACAAAAAGATGTGTG.............................. 28 0 1 1.00 1 1 0
................................................................................................................ATCTGTAGCAGTTAACAAAAAGATGTGTGTT............................ 31 1 1 1.00 1 1 0
......GCGTTGCGAAACTTTGGC................................................................................................................................................... 18 0 1 1.00 1 0 1
.......................................................................................................GGAATATATATCTGTAGCAGTTAACAAAA....................................... 29 1 1 1.00 1 1 0
................................ATCCATTGCTTTTTGCTGGTTAAAATGT............................................................................................................... 28 2 1 1.00 1 1 0
..........................................................................................................ATATATATCTGTAGCAGTTAACAAAAAGA.................................... 29 0 1 1.00 1 1 0
......................................................................................................TTGAATATATATCTGTAGCAGTTA............................................. 24 0 1 1.00 1 1 0
.......................................................................................................................GCAGTTAACAAAAAGATGTGTGTGT........................... 25 0 1 1.00 1 0 1
.....................................................................................................................TAGCAGTTAACAAAAAGATGTTTGTGT........................... 27 1 1 1.00 1 1 0
.....................................................................................................................TAGCAGTTAACAAAAAGATGTTTGT............................. 25 1 1 1.00 1 1 0
.......................................................................................................................GCAGTTAACAAAAAGATGTGTGTGTGT......................... 27 0 1 1.00 1 1 0
......................................................................................................................AGCAGTTAACAAAAAGATGTTTGTGTGTG........................ 29 1 1 1.00 1 1 0
...........................................................................................................TATATATCTGTAGCAGTTAACAAAA....................................... 25 0 1 1.00 1 1 0
.................................................................................................................TCTGTAGCAGTTAACAAAAAGATGTG................................ 26 0 1 1.00 1 1 0
.......................................................................................................TGAATATATATCTGTAGCAGTTAACAAAA....................................... 29 0 1 1.00 1 1 0
...........................................................................................................TATATATCTGTAGCAGTTAACAAA........................................ 24 0 1 1.00 1 1 0
....................................................................................................................GTAGCAGTTAACAAAAAGATGTTTGTGTGT......................... 30 1 1 1.00 1 1 0
...................................................................................................................TGTAGCAGTTAACAAAAAGATGTTTG.............................. 26 1 1 1.00 1 1 0
.................................................................................................................TCTGTAGCAGTTAACAAAAAGATG.................................. 24 0 1 1.00 1 1 0
...........................................................................................................TATATATCTGTAGCAGTTAACAAAAAGTCG.................................. 30 2 1 1.00 1 1 0
........................................................................................................................CAGTTAACAAAAAGATGTGTGTGT........................... 24 0 1 1.00 1 1 0
......................................................................................................TTGAATATATATCTGTAGCAGTTAA............................................ 25 0 1 1.00 1 1 0

Anti-sense strand reads

GACCGTCGCAACGCTTTGAAACCGGAACAAGCAAGGTAACGAAAAGCGACCAATTTTACACACCCAACCCCCTAAAAGAAAGGTGTCTACGACAGAAGGGGGAACTTATATATAGACATCGTCAATTGTTTTTCTACACACACACACGTGCACGCGCACACACGCTCCCAC
***********************************.....(((((.((((......(((((((....((((((..........((((...))))..)))))).....)))))))......)))).....)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
.....TCGCAACGCTTTGAAACCGGAACAA............................................................................................................................................. 25 0 1 2.00 2 2
..........ACGCTTTGAAACCGGAACAAGCAAGG....................................................................................................................................... 26 0 1 2.00 2 2
.......................GGAACAAGCAAGGTAACGAAAAGC............................................................................................................................ 24 0 1 2.00 2 2
...........................................................................................ACAGAAGGGGGAACTTATATATAGAC...................................................... 26 0 1 1.00 1 1
....................ACCGGAACAAGCAAGGTAACGAA................................................................................................................................ 23 0 1 1.00 1 1
..................AAACCGGAACAAGCAAGGTAACGA................................................................................................................................. 24 0 1 1.00 1 1
................................................................................................................................TTTTTCTACAAACACACACGTGCACGC................ 27 1 1 1.00 1 1
.......................................................................................................ACTTATATATAGACATCGTCAAT............................................. 23 0 1 1.00 1 1
........................GAACAAGCAAGGTAACGAAAAGCGACC........................................................................................................................ 27 0 1 1.00 1 1
.................................................................................................................AGACATCGTCAATTGTTTTTCT.................................... 22 0 1 1.00 1 1

Generated: 05/16/2015 at 12:54 AM