ID:

ocu-mir-703

Coordinate:

chrUn0033:1225760-1225873 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.9 -17.9 -17.8 -17.8
mature
  1. chr1:188054503-188054526 +
  2. chr11:52345004-52345027 +
  3. chr12:60379842-60379865 -
  4. chrUn0033:1225781-1225804 -
  5. chrUn0111:655885-655908 +
  6. chrUn0658:53712-53735 -
star
  1. chr11:52344942-52344964 +
  2. chr12:60379896-60379918 -
  3. chr12:72564651-72564673 -
  4. chr7:135378100-135378122 -
  5. chrUn0033:1225836-1225858 -
  6. chrUn0658:53766-53788 -

Sense Strand Reads

ACGGTCTCGGAACTGTTTGTCTCAATTGGCCATTTAAGTTTAATAGTAAAAGACTGGTTAATGATAACAATGCATCGTAAAACCTTCAGAAGGAAAGGAGAATGTTTTGTGGACCATTTTTTTTTGTGCGTGGCAGTTTTAAGTTATTAGTTTTTAAAATCAGTACTTTTTAATGGAAACAACTTGACCAAAAATCTGTCACAGAATTTTGAGA
**************************************************.......(((.(((((((..(((..((((.......((((((((((((...............)).))))))))))))))..))).......))))))).....))).********************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
GSM1528820
Adult_testes
..........................................................................................................................................................................TAATGGAAACAACTTGACCAAAAATCT................. 27 0 15 0.20 3 3 0
.......................................................................................................................TTTTTTGTGCGTGGCAGTTTTAAG....................................................................... 24 0 6 0.17 1 1 0
.................................................................AACAATGCATCGTAAAACCTTCA.............................................................................................................................. 23 0 6 0.17 1 1 0
................................................................TAACAATGCATCGTAAAACCTTCAGA............................................................................................................................ 26 0 6 0.17 1 1 0
.......................AATTGGCCATTTAAGTTTAATAGTAAA.................................................................................................................................................................... 27 0 13 0.15 2 2 0
........................................TAATAGTAAAAGACTGGTTAATGAT..................................................................................................................................................... 25 0 15 0.13 2 2 0
...................................................................................................................................................................TACTTTTTAATGGAAACAACTTGACC......................... 26 0 16 0.13 2 0 2
......................................................TGGTTAATGATAACAATGCATCGTA....................................................................................................................................... 25 0 8 0.13 1 1 0
....................................................................AATGCATCGTAAAACCTTCAGA............................................................................................................................ 22 0 8 0.13 1 1 0
............................................AGTAAAAGACTGGTTAATGATAACAATGCAT........................................................................................................................................... 31 0 10 0.10 1 1 0
..................................................................................CCTTCAGAAGGAAAGGAGAATGTTTT.......................................................................................................... 26 0 11 0.09 1 1 0
................................................................................................................................................................CAGTACTTTTTAATGGAAACAACTTG............................ 26 0 14 0.07 1 1 0
........................................TAATAGTAAAAGACTGGTTAATGA...................................................................................................................................................... 24 0 15 0.07 1 1 0
........................................TAATAGTAAAAGACTGGTTAATGATA.................................................................................................................................................... 26 0 15 0.07 1 1 0
.................................................................................................................................................................AGTACTTTTTAATGGAAACAACTTG............................ 25 0 16 0.06 1 1 0
..........................................................................................................................................................TAAAATCAGTACTTTTTAATGGAAA................................... 25 0 17 0.06 1 1 0
.........................................AATAGTAAAAGACTGGTTAATG....................................................................................................................................................... 22 0 17 0.06 1 1 0
........................................TAATAGTAAAAGACTGGT............................................................................................................................................................ 18 0 17 0.06 1 0 1
.............................................................................................................................................................................................AAAAATCTGTCACAGAATTTTGAG. 24 0 20 0.05 1 0 1
...............................................................................................AGGAGAATGTTTTGT........................................................................................................ 15 0 20 0.05 1 0 1
.............................................................................................................................................................................................AAAAATCTGTCACAGAATTTT.... 21 0 20 0.05 1 0 1

Anti-sense strand reads

TGCCAGAGCCTTGACAAACAGAGTTAACCGGTAAATTCAAATTATCATTTTCTGACCAATTACTATTGTTACGTAGCATTTTGGAAGTCTTCCTTTCCTCTTACAAAACACCTGGTAAAAAAAAACACGCACCGTCAAAATTCAATAATCAAAAATTTTAGTCATGAAAAATTACCTTTGTTGAACTGGTTTTTAGACAGTGTCTTAAAACTCT
********************************************************.......(((.(((((((..(((..((((.......((((((((((((...............)).))))))))))))))..))).......))))))).....))).**************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
............................................TCATTTTCTGACCAATTACTATTGTTA............................................................................................................................................... 27 0 14 0.07 1 1
.........................................TTATCATTTTCTGACCAATTACTATTGTTA............................................................................................................................................... 30 0 14 0.07 1 1

Generated: 05/16/2015 at 12:54 AM