ID:

ocu-mir-682

 Coordinate:

chr19:23226757-23226852 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.6 -29.2 -28.7
mature
  1. chr12:65734564-65734587 -
  2. chr13:78262217-78262240 +
  3. chr17:37747820-37747843 +
  4. chr19:23226807-23226830 +
  5. chr2:15219894-15219917 -
star
  1. chr1:139135635-139135656 -
  2. chr12:96974947-96974968 -
  3. chr13:78262180-78262201 +
  4. chr17:37747783-37747804 +
  5. chr19:23226770-23226791 +
  6. chr2:15219933-15219954 -
  7. chr7:157931064-157931085 +

Sense Strand Reads

ATGCCAAGTACACTTGCTCCTTTTGCGGCAAAACCAAGATGAAGAGATGAGCCGTGGGGATCTGGCACTGTGGCTCCTGCATGAAAACAGTGGCTGGTGGTGCCTGGACATACAACACCACTTCTGCCGTCACAGTGAAGTCTGCGATCAGAAGACTGAAAGAATTGAAAGACCAGTAGAGGTGCCATATGAGACA
************************************************............((....((((((((.................(((.(((((((..((......)).)))))))...))))))))))))).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
.......................................................................................................................................................AAGACTGAAAGAATTGAAAGACCAG.................... 25 0 5 2.00 10 10 0
..............................................................................................................................................TGCGATCAGAAGACTGAAAGAATT.............................. 24 0 7 0.71 5 5 0
..........................................................................................................................................................ACTGAAAGAATTGAAAGACCAGTA.................. 24 0 4 0.50 2 2 0
...........................................................................................................................................GTCTGCGATCAGAAGACTGAAAGAATT.............................. 27 0 7 0.43 3 0 3
..........................................................................................................GACATACAACACCACTTCTGCCGTCACT.............................................................. 28 1 3 0.33 1 1 0
.................................................AGCCGTGGGGATCTGGCACTGTGGCTC........................................................................................................................ 27 0 7 0.29 2 0 2
..............................................................................................................................................TGCGATCAGAAGACTGAAAGAAT............................... 23 0 7 0.29 2 2 0
...........................................................................................................................................GTCTGCGATCAGAAGACTGAAAGA................................. 24 0 7 0.29 2 2 0
..........................................................................................................................................................ACTGAAACAATTGAAAGACCAGT................... 23 1 4 0.25 1 1 0
................................................................................................................................................................AGAATTGAAAGACCAGTAGAGG.............. 22 0 4 0.25 1 1 0
.........................................................................................................................................................GACTGAAAGAATTGAAAGACCAGT................... 24 0 4 0.25 1 1 0
.............................................................................................................................................................GAAAGAATTGAAAGACCAGTAGAGGT............. 26 0 4 0.25 1 1 0
................................................................................................................................................................AGAATTGAAAGACCAGTAGAGGTGCC.......... 26 0 4 0.25 1 1 0
...................................................................................................................................................................ATTGAAAGACCAGTAGAGGTGCC.......... 23 0 4 0.25 1 1 0
............................................................................................................................................................TGAAAGAATTGAAAGACCAGTAGA................ 24 0 4 0.25 1 1 0
................................................................................................................................................................AGAATTGAAAGACCAGTAGAGGT............. 23 0 4 0.25 1 1 0
................................................................................................................................................................AGAATTGAAAGACCAGTAGAGGTGCCA......... 27 0 4 0.25 1 1 0
....................................................................................................................................................................TTGAAAGACCAGTAGAGGTGCC.......... 22 0 4 0.25 1 1 0
...............................................................................................................................................................CGGAATTGAAAGACCAGTAGAGGTGCCATAT...... 31 2 4 0.25 1 1 0
.........................................................................................................................................................................AGACCAGTAGAGGTGCCATATGAGAC. 26 0 4 0.25 1 0 1
.............................................................................................................................................................GAAAGAATTGAAAGACCAGTAGAGG.............. 25 0 4 0.25 1 1 0
.............................................................................................................................................................GAAAGAATTGAAAGACCAGTAGA................ 23 0 4 0.25 1 1 0
..........................................................................................................................................................ACTGAAAGAATTGAAAGACCAGT................... 23 0 4 0.25 1 1 0
....................................................................................................TGCCTGGACATACAACACCACTTC........................................................................ 24 0 5 0.20 1 1 0
.................................................................................................................................................GATCAGAAGACTGAAAGAATTGAAAGAC....................... 28 0 5 0.20 1 1 0
.........................................................................................................................................................GACTGAAAGAATTGAAAGACCAG.................... 23 0 5 0.20 1 1 0
.................................................................................................................................................GATCAGAAGACTGAAAGAATTGAAAGACT...................... 29 1 5 0.20 1 1 0
...........................................................................................................................................GTCTGCGATCAGAAGACTGAAAG.................................. 23 0 7 0.14 1 1 0
...........................................................................................GGCTGGTGGTGCCTGGAC....................................................................................... 18 0 7 0.14 1 0 1
..........................................................................................................................................AGTCTGCGATCAGAAGACTGAAAGA................................. 25 0 7 0.14 1 1 0
...............................................................GGCACTGTGGCTCCTGCATGAA............................................................................................................... 22 0 7 0.14 1 0 1
..............................................................................................................................................TGCGAACAGAAGACTGAAAGAATTGA............................ 26 1 7 0.14 1 1 0
................................................................GCACTGTGGCTCCTGC.................................................................................................................... 16 0 18 0.11 2 0 2
.........................................................................................GTGGCTGGTGGTGCCT........................................................................................... 16 0 13 0.08 1 0 1

Anti-sense strand reads

TACGGTTCATGTGAACGAGGAAAACGCCGTTTTGGTTCTACTTCTCTACTCGGCACCCCTAGACCGTGACACCGAGGACGTACTTTTGTCACCGACCACCACGGACCTGTATGTTGTGGTGAAGACGGCAGTGTCACTTCAGACGCTAGTCTTCTGACTTTCTTAACTTTCTGGTCATCTCCACGGTATACTCTGT
*********************************************************............((....((((((((.................(((.(((((((..((......)).)))))))...))))))))))))).************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:40 AM