ID:

ocu-mir-543

 Coordinate:

chrUn0352:130073-130148 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.5 -32.8 -32.8

Sense Strand Reads

AGCCCCTCACCCACACAGACGCCGCCCAGGGGCCCACGCCCAGCCTGTGGTTCCTGAGAAGAAGTTGCCCATGTTATTTTCGCTGTATGTGTGACGAAACAAACATGGTGCACTTCTTTTCCGGCATCAGATCTCGCCTGGAAGGGCGCCCTGGCCGCTTGGGCACCTGGGGCACT
********************************************...((((.((.((((((((((.(((((((((..(((((............)))))..))))))).)))))))))))).)).))))..********************************************* 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
................................................................................................AAACAAACATGGTGCACTTC............................................................ 20 0 1 15.00 15 15 0
................................................................................................AAACAAACATGGTGCACTTCTT.......................................................... 22 0 1 15.00 15 3 12
................................................................................................AAACAAACATGGTGCACTTCT........................................................... 21 0 1 11.00 11 11 0
................................................................................................AAACAAACATGGTGCACTTCTTT......................................................... 23 0 1 2.00 2 2 0
................................................................................................AAACAAACATGGTGCACTT............................................................. 19 0 1 2.00 2 2 0
...........................................................AGAAGTTGCCCATGTTATTTT................................................................................................ 21 0 1 2.00 2 2 0
...........................................................AGAAGGTGCCCATGTTATTTT................................................................................................ 21 1 1 1.00 1 1 0
............................................................GAAGTTGCCCATGTTATTTT................................................................................................ 20 0 1 1.00 1 1 0
................................................................................................AAACAAACATGGTCCACTTCT........................................................... 21 1 1 1.00 1 1 0
.............................................................................................GAAAAACAAACATGGTGCACTTCTTT......................................................... 26 3 2 0.50 1 1 0

Anti-sense strand reads

TCGGGGAGTGGGTGTGTCTGCGGCGGGTCCCCGGGTGCGGGTCGGACACCAAGGACTCTTCTTCAACGGGTACAATAAAAGCGACATACACACTGCTTTGTTTGTACCACGTGAAGAAAAGGCCGTAGTCTAGAGCGGACCTTCCCGCGGGACCGGCGAACCCGTGGACCCCGTGA
*********************************************...((((.((.((((((((((.(((((((((..(((((............)))))..))))))).)))))))))))).)).))))..******************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP
............................................................................AAAAGCGACATAAACACTGCTTTGT........................................................................... 25 1 1 1.00 1 1

Generated: 05/16/2015 at 12:58 AM