ID:

ocu-mir-5121

 Coordinate:

chrUn0458:63751-63791 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.8 -21.8 -21.5 -21.5

Sense Strand Reads

CATCCTAATAATCTAGCGGAAGTGTGAGGTGATACTTGATCCGTCAGGGCGGGAGGCGGCGCCGGCCCGTGATGAGCACTTATCCACGCGTGTTCGAGTCTCGCGACCGTGAGATGACTCCACATGCACTACCATCTGAGG
***********************************....((.......((((((..((((((.((...(((.....)))....))..))))...))..))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
................................................................GCCCGTGATGAGCACTT............................................................ 17 0 1 47.00 47 47 0
...............................................................GGCCCGTGATGAGCACTT............................................................ 18 0 1 32.00 32 32 0
..............................................................CGGCCCGTGATGAGCACTT............................................................ 19 0 1 13.00 13 13 0
...............................................................GGCCCGTGATGAGCACTTAT.......................................................... 20 0 1 12.00 12 12 0
................................................................GCCCGTGATGAGCACTTAT.......................................................... 19 0 1 9.00 9 9 0
................................................................GCCCGTGATGAGCACT............................................................. 16 0 1 8.00 8 8 0
.................................................................................................GTCTCGCGACCGTGAGATGACT...................... 22 0 1 2.00 2 2 0
................................................................GCCCGTGATGAGCACTTATCC........................................................ 21 0 1 2.00 2 2 0
..............................................................CGGCCCGTGATGAGCACTTATCCACGCGTGTT............................................... 32 0 1 2.00 2 2 0
...............................................................GGCCCGTGATGAGCACT............................................................. 17 0 1 2.00 2 2 0
..............................................................CGGCCCGTGATGAGCACTTATCCACGCGTGT................................................ 31 0 1 2.00 2 2 0
...............................................................GGCCCGTGATGAGCACTTA........................................................... 19 0 1 1.00 1 1 0
...............................................................GGCCCGTGATGAGCACTTATCCACGCGTG................................................. 29 0 1 1.00 1 1 0
............................................................................................................GTGAGATGACTCCACATG............... 18 0 1 1.00 1 1 0
.....................................................................................ACGCGTGTTCGAGTCTCGCGAC.................................. 22 0 1 1.00 1 1 0
.......................................................................................GCGTGTTCGAGTCTCGCGACCGTGAGATGAC....................... 31 0 1 1.00 1 1 0
....................................................................................................................ACTCCACATGCACTACCATCTGA.. 23 0 1 1.00 1 0 1
..............................................................CGGCCCGGGATGAGCACTT............................................................ 19 1 1 1.00 1 1 0
...............................................................GGCCCGTGATGAGCACTTATC......................................................... 21 0 1 1.00 1 1 0
...............................................................GGCCCGTGATGAGCAC.............................................................. 16 0 2 0.50 1 1 0
................................................................GCCCGTGATGAGCAC.............................................................. 15 0 5 0.20 1 1 0

Anti-sense strand reads

GTAGGATTATTAGATCGCCTTCACACTCCACTATGAACTAGGCAGTCCCGCCCTCCGCCGCGGCCGGGCACTACTCGTGAATAGGTGCGCACAAGCTCAGAGCGCTGGCACTCTACTGAGGTGTACGTGATGGTAGACTCC
***********************************....((.......((((((..((((((.((...(((.....)))....))..))))...))..))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:59 AM