ID:

ocu-mir-509

 Coordinate:

chrUn0002:10723762-10723836 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.8 -31.2 -31.0

Sense Strand Reads

ATGTCATCTACAGATCAAACATTTTCAATATTTATGTTGACTTGCTGTGTGTGGTACCCTACTCCAGAGAGTGACAATCATGTATTATTTAATATGATTGAAACCTCTGAGAGTGAGTAACACATGACACAAACAACATATATGATAGCACCATTGGGTGCATTTGTGTGTTTAC
********************************************.((((((((.(((..((((((((((.((..(((((((((........)))))))))..))))))).))))).))).))))).)))********************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528821
Adult_testes_Mili_IP		 GSM1528820
Adult_testes
...........................................................TACTCCAGAGAGTGACAATCAT.............................................................................................. 22 0 1 180.00 180 38 142
...........................................................TACTCCAGAGAGTGACAATC................................................................................................ 20 0 1 96.00 96 91 5
...........................................................TACTCCAGAGAGTGACAATCA............................................................................................... 21 0 1 88.00 88 86 2
...........................................................TACTCCAGAGAGTGACAAT................................................................................................. 19 0 1 49.00 49 15 34
...........................................................TACTCCAGAGAGTGACAATCATG............................................................................................. 23 0 1 14.00 14 2 12
..............................................................................................TGATTGAAACCTCTGAGAGT............................................................. 20 0 1 14.00 14 14 0
..........................................................ATACTCCAGAGAGTGACAATCA............................................................................................... 22 1 1 13.00 13 13 0
..............................................................................................TGATTGAAACCTCTGAGAGTG............................................................ 21 0 1 12.00 12 6 6
..............................................................................................TGATTGAAACCTCTGAGAGTGA........................................................... 22 0 1 11.00 11 1 10
...........................................................TACTCCAGAGAGTGAC.................................................................................................... 16 0 3 10.00 30 0 30
............................................................ACTCCAGAGAGTGACAATCA............................................................................................... 20 0 1 8.00 8 8 0
..........................................................ATACTCCAGAGAGTGACAATC................................................................................................ 21 1 1 8.00 8 8 0
..............................................................................................TGATTGAAACCTCTGAGAGTGAT.......................................................... 23 1 1 6.00 6 1 5
............................................................ACTCCAGAGAGTGACAATC................................................................................................ 19 0 1 5.00 5 5 0
............................................................ACTCCAGAGAGTGACAATCAT.............................................................................................. 21 0 1 5.00 5 3 2
............................................................ACTCCAGAGAGTGACAAT................................................................................................. 18 0 1 4.00 4 1 3
...............................................................CCAGAGAGTGACAATCATG............................................................................................. 19 0 1 4.00 4 0 4
..........................................................ATACTCCAGAGAGTGACAAT................................................................................................. 20 1 1 2.00 2 2 0
..........................................................ATACTCCAGAGAGTGACAATCAT.............................................................................................. 23 1 1 2.00 2 2 0
.........................................................CTTACTCCAGAGAGTGACAATC................................................................................................ 22 1 1 2.00 2 2 0
...........................................................TACTCCAGAGAGTGACAATCATGTA........................................................................................... 25 0 1 2.00 2 2 0
.............................................................................................ATGATTGAAACCTCTGAGAGT............................................................. 21 0 1 2.00 2 2 0
...........................................................TACTCCATAGAGTGACAATCAT.............................................................................................. 22 1 1 2.00 2 0 2
.............................................................CTCCAGAGAGTGACAATC................................................................................................ 18 0 1 2.00 2 2 0
...........................................................TACTCCAGAGAGTGACAATCATGT............................................................................................ 24 0 1 2.00 2 2 0
..................................................................................................TGAAACCTCTGAGAGTGA........................................................... 18 0 1 2.00 2 0 2
...........................................................TACTCCAGAGAGTGACAATCATGTATT......................................................................................... 27 0 1 2.00 2 2 0
..............................................................................................TGATTGAAACCTCTGAGAGTGATGA........................................................ 25 2 1 1.00 1 1 0
...............................................................CCAGAGAGTGACAATCA............................................................................................... 17 0 1 1.00 1 1 0
..............................................................................................AGATTGAAACCTCTGAGAGTGA........................................................... 22 1 1 1.00 1 1 0
...........................................................TACTCCGGAGAGTGACAATCAT.............................................................................................. 22 1 1 1.00 1 0 1
.................................................................AGAGAGTGACAATCAT.............................................................................................. 16 0 2 1.00 2 2 0
..............................................................................................TGATTGAAACCTCTGAGAG.............................................................. 19 0 1 1.00 1 1 0
..........................................................ATACTCCAGAGAGTGACAATCATGTCGTA........................................................................................ 29 3 1 1.00 1 1 0
.........................................................ACTACTCCAGAGAGTGACAATCA............................................................................................... 23 1 1 1.00 1 1 0
...........................................................TACTCCAGAGAGTGACAA.................................................................................................. 18 0 1 1.00 1 1 0
................................................................CAGAGAGTGACAATCATG............................................................................................. 18 0 2 1.00 2 0 2
...............................................................................................GATTGAAACCTCTGAGAGTGA........................................................... 21 0 1 1.00 1 0 1
...........................................................TACTCCAGAGAGCGACAATCA............................................................................................... 21 1 1 1.00 1 1 0
........................................................................................TGACTCTGATTGAAACCTCTGAGAGT............................................................. 26 3 1 1.00 1 1 0
..........................................................ATAATCCAGAGAGTGACAATCA............................................................................................... 22 2 1 1.00 1 1 0
...........................................................GACTCCAGAGAGTGACAATCA............................................................................................... 21 1 1 1.00 1 1 0
.............................................................CTCCAGAGAGTGACAATCAT.............................................................................................. 20 0 1 1.00 1 1 0
...........................................................TACTCCAGAGAGTGACCATCAT.............................................................................................. 22 1 1 1.00 1 0 1
.........................................................AATACTCCAGAGAGTGACAATCAT.............................................................................................. 24 2 1 1.00 1 1 0
..........................................................CTACTCCAGAGAGTGACAATCAT.............................................................................................. 23 0 1 1.00 1 0 1
...........................................................TACTCCAGAGAGTGACAATCGT.............................................................................................. 22 1 1 1.00 1 1 0
...........................................................TACTCCAGAGTGTGACAATCAT.............................................................................................. 22 1 1 1.00 1 0 1
...........................................................TATTCCAGAGAGTGACAATC................................................................................................ 20 1 1 1.00 1 1 0
..............................................................................................TGATTGAAACCTCTGAGAGTGT........................................................... 22 1 1 1.00 1 0 1
...........................................................TACTCCAGAGAGGGACAATCAT.............................................................................................. 22 1 1 1.00 1 0 1
...........................................................TACTCCAGAGAGTGACAATCATGA............................................................................................ 24 1 1 1.00 1 0 1
.........................................................AATACTCCAGAGAGTGACAATCATG............................................................................................. 25 2 1 1.00 1 1 0
...................................................................................................GAAACCTCTGAGAGTGAT.......................................................... 18 1 5 0.60 3 0 3
...............................................................CCAGGGAGTGACAATCATG............................................................................................. 19 1 2 0.50 1 0 1
...........................................................TACTCCAGAGAGTCACAATC................................................................................................ 20 1 2 0.50 1 1 0
...........................................................TACTCCAGAGAGGGACAATC................................................................................................ 20 1 2 0.50 1 1 0
................................................................CAGAGAGTGACAATCAT.............................................................................................. 17 0 2 0.50 1 0 1
...........................................................TACTCCAGAGAGTGACA................................................................................................... 17 0 2 0.50 1 1 0
...........................................................TACTCCAGAGAGGGACAATCA............................................................................................... 21 1 2 0.50 1 1 0
...........................................................TACTCCAGAGAGTGA..................................................................................................... 15 0 5 0.40 2 0 2
................................................................CAGAGAGTGACAATC................................................................................................ 15 0 8 0.38 3 3 0
...........................................................TACTCCAGAGAGGGACAAT................................................................................................. 19 1 3 0.33 1 1 0
...............................................................CCAGAGAGTGACAATC................................................................................................ 16 0 3 0.33 1 1 0
.......................................................AAAATACTCCAGAGAGTGACAATC................................................................................................ 24 3 4 0.25 1 1 0
........................................................CATTACTCCAGAGAGTGACAAT................................................................................................. 22 2 4 0.25 1 0 1
..................................................................GAGAGTGACAATCAT.............................................................................................. 15 0 4 0.25 1 1 0
...........................................................GACGCCAGAGAGTGACAATCA............................................................................................... 21 2 6 0.17 1 1 0
........................................................GAATACTCCAGAGAGTGACAAT................................................................................................. 22 3 20 0.05 1 1 0
...........................................................TACTCCAGAGAGCGAC.................................................................................................... 16 1 20 0.05 1 0 1

Anti-sense strand reads

TACAGTAGATGTCTAGTTTGTAAAAGTTATAAATACAACTGAACGACACACACCATGGGATGAGGTCTCTCACTGTTAGTACATAATAAATTATACTAACTTTGGAGACTCTCACTCATTGTGTACTGTGTTTGTTGTATATACTATCGTGGTAACCCACGTAAACACACAAATG
**********************************************.((((((((.(((..((((((((((.((..(((((((((........)))))))))..))))))).))))).))).))))).)))******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:51 AM