ID:

ocu-mir-505

 Coordinate:

chrUn0002:3182525-3182614 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-48.1 -47.9 -47.8 -47.6

Sense Strand Reads

AAAATATTCACTGTTTGTCACTTGCAGCAGAAGAGCAGCCTGCCGGTGGTAAATTGATGCACCCAGTGGGGGAGCCAGGAAGTATTGATGTTTCTGCCAGTTTAGCGTCAACACTTGCTGGTTTCCTCTTTGGAGCATCACCAAATTCGTGGATTATCTTTTCCCTGACTTTTGGACTTTTATTACTGCT
***********************************.((........(((.....((((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).)))))))))..........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528820
Adult_testes		 GSM1528821
Adult_testes_Mili_IP
..........................................................................................................GTCAACACTTGCTGGTTTCCT............................................................... 21 0 1 22.00 22 22 0
.........................................................................................................CGTCAACACTTGCTGGTTTCCT............................................................... 22 0 1 8.00 8 7 1
...........................................................................................................TCAACACTTGCTGGTTTCCT............................................................... 20 0 1 7.00 7 7 0
..........................................................................................................GTCAACACTTGCTGGTTTCCTC.............................................................. 22 0 1 6.00 6 6 0
..........................................................................................................GTCAACACTTGCTGGTTTCCTCA............................................................. 23 1 1 6.00 6 6 0
...........................................................................................................TCAACACTTGCTGGTTTCCTCT............................................................. 22 0 1 6.00 6 6 0
..........................................................................................................GTCAACACTTGCTGGTTTCC................................................................ 20 0 1 4.00 4 4 0
.................................................................................................CAGTTTAGCGTCAACACTTGCTGGTTTCCTCTT............................................................ 33 0 1 3.00 3 3 0
.........................................................................................................CGTCAACACTTGCCGGTTTCCT............................................................... 22 1 1 3.00 3 3 0
...........................................................................................................TCAACACTTGCTGGTTTCC................................................................ 19 0 1 3.00 3 3 0
.........................................................................................................CGTCAACACTTGCTGGTTTCC................................................................ 21 0 1 2.00 2 2 0
..........................................................................................................GTCAACGCTTGCTGGTTTCCT............................................................... 21 1 1 1.00 1 1 0
..........................................................................................................GTCAACACTTGCTGGTTTCCTCTTT........................................................... 25 0 1 1.00 1 1 0
..........................................................................................................GTCAACACTTGCTGGTTTCCTCT............................................................. 23 0 1 1.00 1 1 0
............................................................................................................CAACACTTGCTGGTTTCCT............................................................... 19 0 1 1.00 1 1 0
.........................................................................................................CGTCAACACTTGCTGGTTTCCTC.............................................................. 23 0 1 1.00 1 1 0
...........................................................................................................TCAACACTTGCTGGTTT.................................................................. 17 0 3 0.67 2 2 0
...............................................................................................................CACTTGCTGGTTTCCT............................................................... 16 0 7 0.57 4 4 0
..........................................................................................................GTCAACACTTGCTGGT.................................................................... 16 0 2 0.50 1 1 0
...........................................................................................................TCAACACTTGCTGGTTTCCTTT............................................................. 22 1 2 0.50 1 1 0
...........................................................................................................TCAACAATTGCTGGTTTCCT............................................................... 20 1 2 0.50 1 1 0
..........................................................................................................GTCAACACTTGCTGGCTTCCT............................................................... 21 1 2 0.50 1 1 0
..........................................................................................................GTCCACACTTGCTGGTTTCCTTTTT........................................................... 25 2 2 0.50 1 1 0
.............................................................................................................AACACTTGCTGGTTTCCT............................................................... 18 0 2 0.50 1 0 1
..........................................................................................................GTCAACATTTGCTGGTTTCC................................................................ 20 1 3 0.33 1 1 0
..............................................................................................................ACACTTGCTGGTTTC................................................................. 15 0 8 0.13 1 1 0

Anti-sense strand reads

TTTTATAAGTGACAAACAGTGAACGTCGTCTTCTCGTCGGACGGCCACCATTTAACTACGTGGGTCACCCCCTCGGTCCTTCATAACTACAAAGACGGTCAAATCGCAGTTGTGAACGACCAAAGGAGAAACCTCGTAGTGGTTTAAGCACCTAATAGAAAAGGGACTGAAAACCTGAAAATAATGACGA
***********************************.((........(((.....((((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).)))))))))..........))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 05/16/2015 at 12:51 AM